C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182659 Rbm5-001 ENSMUSG00000032580 10090 - 9:107740371-107770996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000182659
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000182659 7.929±2.28 12.864±0.00 7.207±1.91 3.375±1.18 19.092±0.00 11.152±1.98

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 ISS spliceosomal complex assembly
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000155483 rbm5-002 protein_coding Danio_rerio 2e-40 172
ENSDART00000114198 rbm5-201 protein_coding Danio_rerio 2e-19 102
ENSDART00000156839 rbm5-001 retained_intron Danio_rerio 2e-19 102
ENST00000347869 RBM5-001 protein_coding Homo_sapiens 0 3873
ENST00000395174 RBM5-014 nonsense_mediated_decay Homo_sapiens 0 1013
ENST00000404526 RBM5-012 protein_coding Homo_sapiens 0 488
ENST00000417905 RBM5-009 protein_coding Homo_sapiens 0 566
ENST00000433556 RBM5-013 retained_intron Homo_sapiens 0 457
ENST00000434592 RBM6-008 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000437500 RBM5-008 protein_coding Homo_sapiens 0 490
ENST00000438369 RBM5-011 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000441305 RBM5-007 protein_coding Homo_sapiens 0 647
ENST00000441812 RBM5-029 processed_transcript Homo_sapiens 0 377
ENST00000461242 RBM5-027 retained_intron Homo_sapiens 3e-33 145
ENST00000462025 RBM5-015 retained_intron Homo_sapiens 0 198
ENST00000464087 RBM5-004 retained_intron Homo_sapiens 0 2272
ENST00000464988 RBM5-025 retained_intron Homo_sapiens 0 505
ENST00000469838 RBM5-003 protein_coding Homo_sapiens 0 726
ENST00000471995 RBM5-016 retained_intron Homo_sapiens 0 375
ENST00000474818 RBM5-018 retained_intron Homo_sapiens 0 848
ENST00000475128 RBM5-021 retained_intron Homo_sapiens 0 795
ENST00000475590 RBM5-026 retained_intron Homo_sapiens 0 697
ENST00000479275 RBM5-024 retained_intron Homo_sapiens 0 370
ENST00000489437 RBM5-019 retained_intron Homo_sapiens 0 632
ENST00000492430 RBM5-023 retained_intron Homo_sapiens 0 540
ENST00000492472 RBM5-010 retained_intron Homo_sapiens 0 544
ENST00000493993 RBM5-022 retained_intron Homo_sapiens 0 399
ENST00000494360 RBM5-017 retained_intron Homo_sapiens 0 534
ENST00000496179 RBM5-005 retained_intron Homo_sapiens 0 965

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