C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 9341
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183000 Gm9341-001 ENSMUSG00000098031 10090 + 7:135952798-135953783 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverOvaryENSMUST00000183000
Transcript ID Adipose Breast Colon Heart Kidney Liver Ovary
ENSMUST00000183000 0.047±0.01 0.206±0.19 0.070±0.00 0.059±0.03 0.045±0.02 0.049±0.00 0.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083E CIL_00083E_0002 VISTA 7:135456830-136057856
CIL_0001LH CIL_0001LH_0002 CGP 7:135689788-137128187
CIL_0007OP CIL_0007OP_0002 UCNEbase 7:135757037-137452523
CIL_000993 CIL_000993_0002 VISTA 7:135783205-136384349

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 7.9874e-44 182
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 819
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 632
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 809
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 819
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 819
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 667
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 780
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 433
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 409
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 800
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 436
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 632
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 632
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 586
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 662
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 734

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