C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00083E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs542 VISTA 9606 10:127865799-128466830
GeneTranscriptPositionBiotype
ENSG00000132334 (PTPRE)
protein tyrosine phosphatase, receptor type, E 		ENST00000254667 (PTPRE-003) 127907061-128085855 protein_coding
ENST00000306042 (PTPRE-004) 128047570-128085855 protein_coding
ENST00000442830 (PTPRE-007) 127907152-128049666 protein_coding
ENST00000455661 (PTPRE-006) 127998126-128056163 protein_coding
ENST00000463727 (PTPRE-001) 128068382-128072682 retained_intron
ENST00000467366 (PTPRE-010) 128047406-128056171 protein_coding
ENST00000471218 (PTPRE-008) 127987344-128056170 protein_coding
ENST00000479896 (PTPRE-005) 128047631-128085855 nonsense_mediated_decay
ENST00000487428 (PTPRE-002) 128047619-128049635 retained_intron
ENST00000492479 (PTPRE-011) 128062919-128070841 retained_intron
ENST00000495530 (PTPRE-009) 128047629-128070375 nonsense_mediated_decay
ENSG00000148773 (MKI67)
marker of proliferation Ki-67 		ENST00000368653 (MKI67-002) 128096659-128126204 protein_coding
ENST00000368654 (MKI67-001) 128096659-128126385 protein_coding
ENST00000464771 (MKI67-003) 128101484-128103128 processed_transcript
ENST00000478293 (MKI67-004) 128115510-128126235 processed_transcript
ENST00000484853 (MKI67-005) 128111520-128112449 processed_transcript
ENST00000617118 (MKI67-201) 128096663-128126204 protein_coding
ENSG00000180745 (CLRN3)
clarin 3 		ENST00000368671 (CLRN3-001) 127877841-127892947 protein_coding
ENSG00000227076 (RP11-4C20.4)
 ENST00000433110 (RP11-4C20.4-001) 127934698-127936167 sense_intronic
ENSG00000232259 (RP11-4C20.3)
 ENST00000420845 (RP11-4C20.3-001) 127929376-127934517 lincRNA
ENSG00000234640 (RP11-264E18.1)
 ENST00000454492 (RP11-264E18.1-001) 128316282-128320214 lincRNA
CIL_00083E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs542 VISTA 10090 7:135456830-136057856
GeneTranscriptPositionBiotype
ENSMUSG00000031004 (Mki67)
antigen identified by monoclonal antibody Ki 67 		ENSMUST00000033310 (Mki67-201) 135689788-135716379 protein_coding
ENSMUSG00000041836 (Ptpre)
protein tyrosine phosphatase, receptor type, E 		ENSMUST00000073961 (Ptpre-201) 135537824-135686294 protein_coding
ENSMUSG00000050866 (Clrn3)
clarin 3 		ENSMUST00000053716 (Clrn3-201) 135511466-135528654 protein_coding
ENSMUSG00000088141 (Mir1962)
microRNA 1962 		ENSMUST00000157516 (Mir1962-201) 135566162-135566282 miRNA
ENSMUSG00000097471 (5830432E09Rik)
RIKEN cDNA 5830432E09 gene 		ENSMUST00000180693 (5830432E09Rik-201) 135635931-135652283 lincRNA
ENSMUST00000181940 (5830432E09Rik-202) 135648457-135652314 lincRNA
ENSMUSG00000098031 (Gm9341)
predicted gene 9341 		ENSMUST00000183000 (Gm9341-001) 135952798-135953783 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00083E_0001ENSG00000132334ENST00000254667ENST00000306042ENST00000442830ENST00000455661ENST00000463727ENST00000467366ENST00000471218ENST00000479896ENST00000487428ENST00000492479ENST00000495530ENSG00000148773ENST00000368653ENST00000368654ENST00000464771ENST00000478293ENST00000484853ENST00000617118ENSG00000180745ENST00000368671ENSG00000227076ENST00000433110ENSG00000232259ENST00000420845ENSG00000234640ENST00000454492CIL_00083E_0002ENSMUSG00000031004ENSMUST00000033310ENSMUSG00000041836ENSMUST00000073961ENSMUSG00000050866ENSMUST00000053716ENSMUSG00000088141ENSMUST00000157516ENSMUSG00000097471ENSMUST00000180693ENSMUST00000181940ENSMUSG00000098031ENSMUST00000183000
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00083E_0001ENSG00000132334ENST00000254667ENST00000306042ENST00000479896ENSG00000148773ENST00000368653ENST00000368654ENST00000464771ENST00000617118ENSG00000180745ENST00000368671ENSG00000227076ENST00000433110ENSG00000232259ENST00000420845ENSG00000234640ENST00000454492CIL_00083E_0002ENSMUSG00000031004ENSMUST00000033310ENSMUSG00000041836ENSMUST00000073961ENSMUSG00000050866ENSMUST00000053716ENSMUSG00000088141ENSMUST00000157516ENSMUSG00000097471ENSMUST00000180693ENSMUSG00000098031ENSMUST00000183000
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132334 ENST00000254667 1.988±0.00 4.053±0.00 N/A 3.984±0.12 0.902±0.00 0.756±0.06 1.806±1.28 0.838±0.00 0.182±0.00 1.936±0.95 N/A 1.539±1.21 0.584±0.00 0.756±0.00
ENST00000306042 N/A 1.670±0.00 1.166±0.00 N/A 0.711±0.05 1.362±1.10 0.844±0.13 0.798±0.13 1.086±0.78 5.538±0.00 0.112±0.00 1.535±0.76 1.610±0.27 0.627±0.09
ENST00000442830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479896 1.321±0.00 1.208±0.00 N/A 1.263±0.00 0.551±0.00 N/A N/A N/A N/A 1.809±0.00 N/A 0.396±0.16 N/A 0.185±0.00
ENST00000487428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148773 ENST00000368653 0.102±0.00 N/A 0.111±0.00 0.019±0.01 0.076±0.00 0.460±0.00 0.172±0.00 N/A 0.046±0.01 0.132±0.01 0.020±0.00 31.765±0.00 2.947±2.46 1.736±0.93
ENST00000368654 N/A N/A N/A N/A 1.585±0.00 0.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464771 N/A N/A N/A N/A N/A 1.040±0.00 N/A N/A N/A 1.027±0.00 N/A N/A N/A N/A
ENST00000478293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617118 N/A N/A N/A N/A 0.384±0.00 2.903±0.00 N/A N/A 0.038±0.00 0.202±0.00 N/A 7.390±0.00 1.071±0.00 0.768±0.00
ENSG00000180745 ENST00000368671 0.305±0.00 0.022±0.00 0.497±0.00 0.225±0.00 0.894±0.81 3.396±0.09 0.070±0.00 7.704±2.52 10.080±0.00 0.047±0.00 N/A 8.764±6.14 0.090±0.02 0.048±0.02
ENSG00000227076 ENST00000433110 N/A 0.060±0.00 N/A N/A 0.127±0.00 0.115±0.00 0.181±0.07 N/A N/A 0.792±0.00 N/A N/A 0.161±0.00 0.722±0.33
ENSG00000232259 ENST00000420845 N/A 0.086±0.00 0.194±0.00 0.141±0.00 0.108±0.06 0.534±0.42 0.110±0.06 N/A N/A 0.184±0.00 N/A 0.341±0.00 N/A 0.638±0.03
ENSG00000234640 ENST00000454492 0.132±0.00 0.141±0.00 N/A 0.083±0.00 N/A N/A N/A N/A N/A 0.217±0.00 N/A 0.170±0.00 N/A 0.595±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031004 ENSMUST00000033310 1.197±1.04 0.827±0.12 0.257±0.05 2.720±1.87 0.685±0.31 3.604±0.50 0.114±0.01 0.153±0.04 25.897±33.75 0.316±0.11 0.035±0.01 4.259±4.83 12.609±10.69 2.130±1.83
ENSMUSG00000041836 ENSMUST00000073961 1.797±0.31 0.945±0.25 2.765±0.02 2.992±2.02 4.296±0.86 3.222±0.82 0.912±0.21 0.674±0.16 1.227±0.91 12.730±0.36 0.195±0.11 4.792±2.52 1.943±0.56 2.674±0.80
ENSMUSG00000050866 ENSMUST00000053716 0.027±0.00 N/A 0.002±0.00 0.002±0.00 0.011±0.00 22.176±3.87 N/A 13.475±3.16 0.021±0.01 0.129±0.09 N/A 0.073±0.04 0.795±0.81 0.015±0.01
ENSMUSG00000088141 ENSMUST00000157516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.006±0.00 N/A N/A
ENSMUSG00000097471 ENSMUST00000180693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A
ENSMUST00000181940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098031 ENSMUST00000183000 0.047±0.01 N/A N/A N/A 0.206±0.19 0.070±0.00 0.059±0.03 0.045±0.02 0.049±0.00 N/A N/A 0.037±0.00 N/A N/A

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