C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000058384 gapdhs-001 ENSDARG00000039914 7955 - 16:47879730-47904970 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000058384
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000058384 591.154±574.53 107.130±111.13 35.765±48.83 6.369±0.00 114.906±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UZ CIL_0006UZ_0001 CGP 16:47854537-47904970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006006 IEA glucose metabolic process
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661 IEA NADP binding
GO:0051287 IEA NAD binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050581 Gm5069-002 protein_coding Mus_musculus 0 418
ENSMUST00000071282 Gm3222-201 processed_pseudogene Mus_musculus 0 460
ENSMUST00000073605 Gapdh-201 protein_coding Mus_musculus 0 483
ENSMUST00000076317 Gm10293-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000077127 Gm3839-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000082064 Gm6316-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000086739 Gm10566-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000087222 Gm3695-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000091897 Gm5507-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000094175 Gm10291-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000095320 Gm10313-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000095717 Gm4795-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000099956 Gm8055-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000100754 Gm2606-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000105222 Gm10327-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000106443 Gm4609-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000107041 Gm7336-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000108740 Gm10358-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000113842 Gm5138-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000117318 Gm11453-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000117732 Gm11185-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000117757 Gapdh-003 protein_coding Mus_musculus 0 483
ENSMUST00000117926 Gm13527-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000118148 Gm13592-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000118182 Gm5944-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118417 Gm14130-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000118477 Gm13501-001 processed_pseudogene Mus_musculus 2.99878e-43 180
ENSMUST00000118655 Gm12182-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000118700 Gm9164-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000118789 Gm6322-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118792 Gm18859-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000118859 Gm12719-001 processed_pseudogene Mus_musculus 8e-23 110
ENSMUST00000118875 Gapdh-001 protein_coding Mus_musculus 0 483
ENSMUST00000119246 Gm12286-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000119266 Gm12537-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000119418 Gm13464-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000119551 Gm12070-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000119851 Gm14111-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000119978 Gm12671-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000120014 Gm13292-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120199 Gm12969-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000120200 Gm11557-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120311 Gm12266-001 processed_pseudogene Mus_musculus 6e-25 119
ENSMUST00000120886 Gm13882-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000120911 Gm12416-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000120913 Gm11658-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121515 Gm13466-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000121658 Gm13394-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000121760 Gm5863-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000121831 Gm14760-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000122068 Gm11960-001 transcribed_processed_pseudogene Mus_musculus 0 327
ENSMUST00000122262 Gm6298-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000122352 Gm11953-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000122433 Gm14148-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000122453 Gm12017-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000145057 Gm10284-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000163135 Gm17068-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000180167 Gm10359-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000180654 Gm12033-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000180755 Gm5559-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000180794 Gm5976-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000180966 Gm20899-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000180973 Gm3809-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000181051 Gm2574-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000181063 Gm11960-002 processed_transcript Mus_musculus 0 327
ENSMUST00000181173 Gm3839-001 protein_coding Mus_musculus 0 473
ENSMUST00000181181 Gm3272-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000181451 Gm8941-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000181461 Gm2383-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000181493 Gm3200-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000181978 Gm8927-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000181990 Gm4823-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000182057 Gm5350-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000182071 Gm9034-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000182090 Gm6463-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000182170 Gm4819-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000182266 Gm2467-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000182270 Gm27037-001 processed_pseudogene Mus_musculus 9.99967e-42 174
ENSMUST00000182279 Gm4891-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000182326 Gm8254-001 processed_pseudogene Mus_musculus 2e-39 167
ENSMUST00000182336 Gm5652-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000182346 Gm9081-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000182369 Gm6283-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000182418 Gm7069-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000182449 Gm6944-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000182466 Gm17800-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000182467 Gm6981-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000182525 Gm5430-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000182555 Gm8048-001 processed_pseudogene Mus_musculus 2e-40 171
ENSMUST00000182565 Gm8825-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000182630 Gm2546-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000182638 Gm4518-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000182641 Gm5274-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000182661 Gm7251-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000182695 Gm8079-001 processed_pseudogene Mus_musculus 4e-32 143
ENSMUST00000182720 Gm8349-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000182730 Gm5272-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000182757 Gm9658-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000182798 Gm2445-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000182830 Gm8513-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000182847 Gm4812-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000182862 Gm7456-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000182906 Gm8100-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000182991 Gm4575-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000183000 Gm9341-001 processed_pseudogene Mus_musculus 7.9874e-44 182
ENSMUST00000183221 Gm9192-001 processed_pseudogene Mus_musculus 2.99878e-43 180
ENSMUST00000183250 Gm8756-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000183259 Gm8565-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000183270 Gm17799-001 processed_pseudogene Mus_musculus 4.2039e-45 185
ENSMUST00000183272 Gapdh-017 protein_coding Mus_musculus 0 436
ENSMUST00000183288 Gm7833-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000183298 Gm8529-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000183305 Gm4654-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000183329 Gm7985-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000187404 RP24-427A3.1-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 390
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 385
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 390
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 390
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 390
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 274
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 385
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 385
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 1.00053e-42 178
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 385

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