C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183307 Rbm5-006 ENSMUSG00000032580 10090 - 9:107740495-107770981 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183307
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183307 9.282±3.33 6.936±1.79 8.697±0.25 13.581±5.75 9.279±0.71 4.199±1.01 4.005±0.31 3.185±0.52 3.073±0.95 8.793±0.49 3.196±0.39 10.853±3.17 4.475±1.03 5.399±1.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114198 rbm5-201 protein_coding Danio_rerio 9e-36 158
ENSDART00000156839 rbm5-001 retained_intron Danio_rerio 9e-36 158
ENSDART00000155483 rbm5-002 protein_coding Danio_rerio 4e-19 102
ENST00000347869 RBM5-001 protein_coding Homo_sapiens 0 3005
ENST00000395174 RBM5-014 nonsense_mediated_decay Homo_sapiens 0 1014
ENST00000404526 RBM5-012 protein_coding Homo_sapiens 0 473
ENST00000417905 RBM5-009 protein_coding Homo_sapiens 0 566
ENST00000433556 RBM5-013 retained_intron Homo_sapiens 0 457
ENST00000434592 RBM6-008 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000437500 RBM5-008 protein_coding Homo_sapiens 0 490
ENST00000438369 RBM5-011 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000441305 RBM5-007 protein_coding Homo_sapiens 0 647
ENST00000441812 RBM5-029 processed_transcript Homo_sapiens 0 377
ENST00000461242 RBM5-027 retained_intron Homo_sapiens 3e-33 145
ENST00000462025 RBM5-015 retained_intron Homo_sapiens 0 643
ENST00000464087 RBM5-004 retained_intron Homo_sapiens 0 2272
ENST00000464988 RBM5-025 retained_intron Homo_sapiens 0 505
ENST00000469838 RBM5-003 protein_coding Homo_sapiens 0 1646
ENST00000471995 RBM5-016 retained_intron Homo_sapiens 0 375
ENST00000474818 RBM5-018 retained_intron Homo_sapiens 0 848
ENST00000475128 RBM5-021 retained_intron Homo_sapiens 0 795
ENST00000475590 RBM5-026 retained_intron Homo_sapiens 0 697
ENST00000479275 RBM5-024 retained_intron Homo_sapiens 0 370
ENST00000489437 RBM5-019 retained_intron Homo_sapiens 0 632
ENST00000492430 RBM5-023 retained_intron Homo_sapiens 0 540
ENST00000492472 RBM5-010 retained_intron Homo_sapiens 0 544
ENST00000493993 RBM5-022 retained_intron Homo_sapiens 0 399
ENST00000494360 RBM5-017 retained_intron Homo_sapiens 0 534
ENST00000496179 RBM5-005 retained_intron Homo_sapiens 0 1666

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