C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein L-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184297 Hnrnpll-005 ENSMUSG00000024095 10090 - 17:80029837-80062227 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184297 4.780±1.01 7.395±5.53 8.177±1.14 9.144±5.68 4.386±1.35 7.677±3.18 2.026±0.53 3.539±1.64 4.306±2.62 6.833±2.56 2.288±0.51 10.049±7.65 8.470±2.31 13.677±6.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0002 CGP 17:79848392-80062334
CIL_00009N CIL_00009N_0002 CGP 17:80029487-80185101

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272249 HNRNPLL-005 nonsense_mediated_decay Homo_sapiens 0 2763
ENST00000358367 HNRNPLL-201 protein_coding Homo_sapiens 0 1733
ENST00000378915 HNRNPLL-202 protein_coding Homo_sapiens 0 1733
ENST00000409328 HNRNPLL-010 protein_coding Homo_sapiens 0 1339
ENST00000409636 HNRNPLL-002 protein_coding Homo_sapiens 0 1733
ENST00000410076 HNRNPLL-004 protein_coding Homo_sapiens 0 896
ENST00000425682 HNRNPLL-007 protein_coding Homo_sapiens 0 606
ENST00000441689 HNRNPLL-008 protein_coding Homo_sapiens 0 503
ENST00000449105 HNRNPLL-001 protein_coding Homo_sapiens 0 1733
ENST00000488099 HNRNPLL-006 retained_intron Homo_sapiens 0 403
ENST00000498516 HNRNPLL-003 processed_transcript Homo_sapiens 9e-22 108
ENST00000608859 HNRNPLL-203 protein_coding Homo_sapiens 0 1733

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