C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein L-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184635 Hnrnpll-001 ENSMUSG00000024095 10090 - 17:80029487-80062227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184635
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184635 6.718±1.65 10.681±0.41 17.781±9.73 2.587±0.80 4.232±1.92 3.428±0.51 5.610±0.54 9.554±6.23 8.819±1.29 3.683±0.39 6.554±1.84 9.581±5.07 9.937±4.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0002 CGP 17:79848392-80062334
CIL_00009N CIL_00009N_0002 CGP 17:80029487-80185101

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0016020 IEA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0033120 ISS positive regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272249 HNRNPLL-005 nonsense_mediated_decay Homo_sapiens 0 1733
ENST00000358367 HNRNPLL-201 protein_coding Homo_sapiens 0 2824
ENST00000378915 HNRNPLL-202 protein_coding Homo_sapiens 0 2084
ENST00000409328 HNRNPLL-010 protein_coding Homo_sapiens 0 1456
ENST00000409636 HNRNPLL-002 protein_coding Homo_sapiens 0 2841
ENST00000410076 HNRNPLL-004 protein_coding Homo_sapiens 0 894
ENST00000425682 HNRNPLL-007 protein_coding Homo_sapiens 0 606
ENST00000441689 HNRNPLL-008 protein_coding Homo_sapiens 0 503
ENST00000449105 HNRNPLL-001 protein_coding Homo_sapiens 0 2841
ENST00000488099 HNRNPLL-006 retained_intron Homo_sapiens 0 403
ENST00000498516 HNRNPLL-003 processed_transcript Homo_sapiens 9e-22 108
ENST00000608859 HNRNPLL-203 protein_coding Homo_sapiens 0 2824

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