C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 20111
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184830 Gm20111-001 ENSMUSG00000098837 10090 + 14:64839100-64839418 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverLungOvaryPlacentaTestisENSMUST00000184830
Transcript ID Adipose Brain Breast Liver Lung Ovary Placenta Testis
ENSMUST00000184830 0.285±0.03 0.244±0.01 0.916±0.37 0.062±0.00 0.494±0.09 0.258±0.00 0.169±0.00 0.209±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UV CIL_0002UV_0002 CGP 14:64652531-64949871

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329092 RPL35A-005 processed_transcript Homo_sapiens 1e-34 150
ENST00000429437 RPL35A-007 nonsense_mediated_decay Homo_sapiens 9.94922e-44 180
ENST00000439255 RPL35A-008 nonsense_mediated_decay Homo_sapiens 1.99965e-42 176
ENST00000442341 RPL35A-006 protein_coding Homo_sapiens 0 202
ENST00000448864 RPL35A-002 protein_coding Homo_sapiens 0 252
ENST00000464167 RPL35A-001 protein_coding Homo_sapiens 0 252
ENST00000468671 RP11-14K2.1-001 processed_pseudogene Homo_sapiens 0 202
ENST00000474640 RPL35A-009 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000485439 RPL35A-004 retained_intron Homo_sapiens 0 226
ENST00000489757 RP11-432B6.1-001 processed_pseudogene Homo_sapiens 2e-40 169
ENST00000495857 RP11-449H3.2-001 processed_pseudogene Homo_sapiens 5.60519e-45 183
ENST00000584631 RPL35AP25-001 processed_pseudogene Homo_sapiens 0 196

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