C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429437 RPL35A-007 ENSG00000182899 9606 + 3:197950206-197955817 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000429437
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000429437 208.512±0.00 321.452±0.00 3.882±0.00 176.607±0.00 163.599±144.66 104.185±0.00 92.436±0.00 65.831±0.00 190.658±0.00 70.999±53.49 906.267±0.00 147.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142
CIL_0006C9 CIL_0006C9_0001 CGP 3:197889075-197960142
CIL_0006CA CIL_0006CA_0001 CGP 3:197949987-198043720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120385 Gm16200-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000161714 Gm16134-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000119839 Gm11483-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000184830 Gm20111-001 processed_pseudogene Mus_musculus 9.94922e-44 180

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