C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442341 RPL35A-006 ENSG00000182899 9606 + 3:197950557-197954120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000442341
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000442341 62.819±0.00 27.162±0.00 20.692±0.00 38.294±0.00 34.866±0.00 21.525±0.00 77.455±24.46 92.708±0.00 40.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142
CIL_0006C9 CIL_0006C9_0001 CGP 3:197889075-197960142
CIL_0006CA CIL_0006CA_0001 CGP 3:197949987-198043720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161714 Gm16134-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000120385 Gm16200-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000119839 Gm11483-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000184830 Gm20111-001 processed_pseudogene Mus_musculus 0 202

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