C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448864 RPL35A-002 ENSG00000182899 9606 + 3:197950194-197955851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448864 390.880±0.00 503.050±0.00 13.819±0.00 158.077±116.55 237.282±162.11 411.372±362.21 150.062±117.04 175.374±129.55 159.136±60.83 424.602±348.21 157.789±128.81 626.462±602.92 446.829±273.46 303.762±274.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142
CIL_0006C9 CIL_0006C9_0001 CGP 3:197889075-197960142
CIL_0006CA CIL_0006CA_0001 CGP 3:197949987-198043720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120385 Gm16200-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000161714 Gm16134-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000119839 Gm11483-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000184830 Gm20111-001 processed_pseudogene Mus_musculus 0 252

Loading