C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185849 Ptprn-003 ENSMUSG00000026204 10090 - 1:75258559-75264502 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006NW CIL_0006NW_0002 CGP 1:75236406-75264502
CIL_0006NX CIL_0006NX_0002 CGP 1:75247027-75278415

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295718 PTPRN-001 protein_coding Homo_sapiens 0 388
ENST00000409251 PTPRN-003 protein_coding Homo_sapiens 0 388
ENST00000412847 PTPRN-012 protein_coding Homo_sapiens 0 396
ENST00000423636 PTPRN-021 protein_coding Homo_sapiens 0 390
ENST00000440552 PTPRN-011 protein_coding Homo_sapiens 0 390
ENST00000442029 PTPRN-013 protein_coding Homo_sapiens 0 390
ENST00000446182 PTPRN-008 protein_coding Homo_sapiens 0 390
ENST00000451506 PTPRN-009 protein_coding Homo_sapiens 0 390
ENST00000462351 PTPRN-006 retained_intron Homo_sapiens 0 327
ENST00000468454 PTPRN-014 processed_transcript Homo_sapiens 0 220
ENST00000476930 PTPRN-016 retained_intron Homo_sapiens 6.99949e-42 174
ENST00000477819 PTPRN-015 retained_intron Homo_sapiens 2e-22 110
ENST00000606213 PTPRN-005 nonsense_mediated_decay Homo_sapiens 0 385

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