C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Parkinson disease (autosomal recessive, juvenile) 2, parkin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186167 Park2-004 ENSMUSG00000023826 10090 + 17:10840384-11557234 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000186167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000186167 0.888±0.15 1.296±0.68 1.865±0.00 1.269±0.00 1.098±0.56 0.752±0.31 1.291±0.34 1.578±0.45 0.610±0.51 1.071±0.17 1.314±0.26 0.764±0.21 0.125±0.03 2.518±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AN CIL_0009AN_0002 VISTA 17:10443926-11046179
CIL_000800 CIL_000800_0002 VISTA 17:10785724-11388280

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338468 PARK2-003 protein_coding Homo_sapiens 0 340
ENST00000366892 PARK2-002 protein_coding Homo_sapiens 0 675
ENST00000366894 PARK2-001 protein_coding Homo_sapiens 0 296
ENST00000366896 PARK2-006 protein_coding Homo_sapiens 0 276
ENST00000366897 PARK2-005 protein_coding Homo_sapiens 0 468
ENST00000366898 PARK2-004 protein_coding Homo_sapiens 0 675
ENST00000479615 PARK2-007 nonsense_mediated_decay Homo_sapiens 0 409

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