C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium response factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187978 Carf-001 ENSMUSG00000026017 10090 + 1:60105344-60153953 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000187978
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000187978 1.080±0.24 1.286±0.24 0.822±0.00 1.774±0.63 1.044±0.17 0.598±0.14 0.412±0.03 0.639±0.12 0.804±0.24 0.939±0.19 0.635±0.07 1.286±0.43 1.021±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0002 CGP 1:59982490-60098645
CIL_00020W CIL_00020W_0002 CGP 1:60069785-60153953
CIL_00020V CIL_00020V_0002 CGP 1:60098247-60338328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 ISS DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0035865 ISS cellular response to potassium ion
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0061400 ISS positive regulation of transcription from RNA polymerase II promoter in response to calcium ion
GO:0071277 ISS cellular response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320443 CARF-201 protein_coding Homo_sapiens 0 1648
ENST00000402905 CARF-001 protein_coding Homo_sapiens 0 1648
ENST00000414439 CARF-004 protein_coding Homo_sapiens 0 1559
ENST00000422368 CARF-003 nonsense_mediated_decay Homo_sapiens 0 942
ENST00000428585 CARF-005 protein_coding Homo_sapiens 0 1648
ENST00000434998 CARF-007 protein_coding Homo_sapiens 0 366
ENST00000438828 CARF-002 protein_coding Homo_sapiens 0 1648
ENST00000444724 CARF-008 protein_coding Homo_sapiens 0 366
ENST00000457031 CARF-006 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000471271 CARF-013 processed_transcript Homo_sapiens 0.000005 57
ENST00000590071 WTIP-001 protein_coding Homo_sapiens 0.0009 53

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