C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188815 Lama3-002 ENSMUSG00000024421 10090 + 18:12504199-12583013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000188815
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000188815 4.387±0.41 0.532±0.13 1.132±0.73 2.566±0.56 0.114±0.00 0.834±0.08 0.041±0.03 0.127±0.05 1.743±0.67 0.418±0.38 0.244±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AV CIL_0005AV_0002 CGP 18:12252362-12583013
CIL_0005WU CIL_0005WU_0002 CGP 18:12333819-12737050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005606 IEA laminin-1 complex
GO:0005610 IDA laminin-5 complex
GO:0007155 IEA cell adhesion
GO:0030155 IEA regulation of cell adhesion
GO:0030334 IEA regulation of cell migration
GO:0045995 IEA regulation of embryonic development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269217 LAMA3-002 protein_coding Homo_sapiens 0 4189
ENST00000313654 LAMA3-001 protein_coding Homo_sapiens 0 4030
ENST00000399516 LAMA3-003 protein_coding Homo_sapiens 0 3197
ENST00000585600 LAMA3-005 non_stop_decay Homo_sapiens 0.00003 55
ENST00000586751 LAMA3-011 protein_coding Homo_sapiens 0 2872
ENST00000587184 LAMA3-004 protein_coding Homo_sapiens 0 3197
ENST00000588770 LAMA3-006 processed_transcript Homo_sapiens 0 3422
ENST00000616172 LAMA3-201 protein_coding Homo_sapiens 0 4030

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