C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005AV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154065-ENSG00000053747 CGP 9606 18:23598926-23955066
GeneTranscriptPositionBiotype
ENSG00000053747 (LAMA3)
laminin, alpha 3 		ENST00000269217 (LAMA3-002) 23872840-23954939 protein_coding
ENST00000313654 (LAMA3-001) 23689443-23955066 protein_coding
ENST00000399516 (LAMA3-003) 23689684-23954648 protein_coding
ENST00000585600 (LAMA3-005) 23689598-23796148 non_stop_decay
ENST00000586709 (LAMA3-007) 23898737-23899700 retained_intron
ENST00000586751 (LAMA3-011) 23884773-23931559 protein_coding
ENST00000587184 (LAMA3-004) 23873045-23954648 protein_coding
ENST00000588004 (LAMA3-012) 23949893-23954799 protein_coding
ENST00000588164 (LAMA3-010) 23928625-23931691 protein_coding
ENST00000588770 (LAMA3-006) 23898261-23954989 processed_transcript
ENST00000590104 (LAMA3-014) 23946184-23946837 protein_coding
ENST00000591749 (LAMA3-015) 23827404-23837312 retained_intron
ENST00000592442 (LAMA3-008) 23931155-23932585 retained_intron
ENST00000592519 (LAMA3-016) 23833953-23834837 protein_coding
ENST00000616172 (LAMA3-201) 23689598-23955063 protein_coding
ENSG00000154065 (ANKRD29)
ankyrin repeat domain 29 		ENST00000322980 (ANKRD29-002) 23600460-23662815 protein_coding
ENST00000585908 (ANKRD29-004) 23648411-23662772 protein_coding
ENST00000586087 (ANKRD29-008) 23629852-23662883 protein_coding
ENST00000586511 (ANKRD29-006) 23618541-23619723 processed_transcript
ENST00000587763 (ANKRD29-007) 23601046-23629920 nonsense_mediated_decay
ENST00000591280 (ANKRD29-003) 23600010-23647997 retained_intron
ENST00000591617 (ANKRD29-005) 23601277-23619824 retained_intron
ENST00000592179 (ANKRD29-001) 23598926-23662885 protein_coding
ENSG00000221389 (AC010754.1)
 ENST00000408462 (AC010754.1-201) 23894115-23894206 miRNA
ENSG00000267301 (RPL23AP77)
ribosomal protein L23a pseudogene 77 		ENST00000588044 (RPL23AP77-001) 23709825-23710287 processed_pseudogene
ENSG00000267752 (RPS10P27)
ribosomal protein S10 pseudogene 27 		ENST00000586795 (RPS10P27-001) 23672253-23672748 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005AV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057766-ENSMUSG00000024421 CGP 10090 18:12252362-12583013
GeneTranscriptPositionBiotype
ENSMUSG00000024421 (Lama3)
laminin, alpha 3 		ENSMUST00000092070 (Lama3-001) 12333819-12583013 protein_coding
ENSMUST00000188815 (Lama3-002) 12504199-12583013 protein_coding
ENSMUSG00000057766 (Ankrd29)
ankyrin repeat domain 29 		ENSMUST00000118525 (Ankrd29-001) 12252362-12305711 protein_coding
ENSMUST00000122408 (Ankrd29-002) 12254582-12305638 protein_coding
ENSMUST00000137948 (Ankrd29-003) 12252365-12271697 processed_transcript
ENSMUST00000142066 (Ankrd29-004) 12275760-12305720 protein_coding
ENSMUSG00000082051 (Gm16072)
predicted gene 16072 		ENSMUST00000119574 (Gm16072-001) 12287404-12289780 processed_pseudogene
ENSMUSG00000088342 (Gm22340)
predicted gene, 22340 		ENSMUST00000157717 (Gm22340-201) 12578424-12578537 rRNA
ENSMUSG00000099663 (RP24-158I9.1)
predicted gene 29201 		ENSMUST00000189120 (RP24-158I9.1-001) 12365799-12366229 processed_pseudogene
ENSMUSG00000100090 (RP23-223O13.2)
predicted gene 29199 		ENSMUST00000187766 (RP23-223O13.2-001) 12498688-12499462 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AV_0001ENSG00000053747ENST00000269217ENST00000313654ENST00000399516ENST00000585600ENST00000586709ENST00000586751ENST00000587184ENST00000588004ENST00000588164ENST00000588770ENST00000590104ENST00000591749ENST00000592442ENST00000592519ENST00000616172ENSG00000154065ENST00000322980ENST00000585908ENST00000586087ENST00000586511ENST00000587763ENST00000591280ENST00000591617ENST00000592179ENSG00000221389ENST00000408462ENSG00000267301ENST00000588044ENSG00000267752ENST00000586795CIL_0005AV_0002ENSMUSG00000024421ENSMUST00000092070ENSMUST00000188815ENSMUSG00000057766ENSMUST00000118525ENSMUST00000122408ENSMUST00000137948ENSMUST00000142066ENSMUSG00000082051ENSMUST00000119574ENSMUSG00000088342ENSMUST00000157717ENSMUSG00000099663ENSMUST00000189120ENSMUSG00000100090ENSMUST00000187766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AV_0001ENSG00000053747ENST00000269217ENST00000313654ENST00000399516ENST00000586709ENST00000586751ENST00000587184ENST00000588004ENST00000588164ENST00000588770ENST00000616172ENSG00000154065ENST00000322980ENST00000585908ENST00000587763ENST00000591280ENST00000591617ENST00000592179ENSG00000221389ENST00000408462ENSG00000267301ENST00000588044ENSG00000267752ENST00000586795CIL_0005AV_0002ENSMUSG00000024421ENSMUST00000092070ENSMUST00000188815ENSMUSG00000057766ENSMUST00000118525ENSMUST00000122408ENSMUST00000137948ENSMUST00000142066ENSMUSG00000082051ENSMUST00000119574ENSMUSG00000088342ENSMUST00000157717ENSMUSG00000099663ENSMUST00000189120ENSMUSG00000100090ENSMUST00000187766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000053747 ENST00000269217 0.383±0.00 0.856±0.00 0.111±0.00 0.274±0.00 1.173±0.00 2.028±1.59 0.657±0.57 0.819±0.00 0.642±0.52 4.741±0.00 N/A 2.022±1.05 22.848±12.68 1.803±0.00
ENST00000313654 N/A N/A N/A 0.281±0.00 0.768±0.06 N/A N/A 0.028±0.00 1.423±0.00 6.359±5.14 N/A 0.887±0.00 N/A N/A
ENST00000399516 0.878±0.00 0.518±0.00 N/A 0.149±0.00 N/A 0.313±0.00 0.469±0.00 0.253±0.00 N/A 1.039±0.00 0.095±0.00 N/A N/A 0.529±0.00
ENST00000585600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586709 N/A N/A 0.576±0.00 N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A
ENST00000586751 N/A N/A N/A N/A 2.611±0.00 1.029±0.00 N/A N/A 1.504±0.00 N/A N/A 3.539±0.00 N/A N/A
ENST00000587184 0.593±0.00 1.080±0.00 0.154±0.00 N/A 2.668±0.00 1.072±0.00 N/A 0.546±0.00 N/A 1.977±0.00 0.405±0.00 2.901±0.00 6.461±0.00 1.156±0.00
ENST00000588004 N/A 6.705±0.00 N/A N/A 13.289±0.00 N/A N/A N/A 1.112±0.00 22.288±0.00 N/A N/A N/A N/A
ENST00000588164 N/A N/A 0.979±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588770 0.741±0.00 0.765±0.00 N/A N/A 1.313±0.00 N/A N/A 0.344±0.15 0.177±0.00 N/A N/A 2.535±0.50 11.829±5.77 1.148±0.00
ENST00000590104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616172 N/A 0.612±0.00 N/A N/A N/A 0.294±0.00 N/A 0.039±0.00 0.027±0.00 N/A N/A 0.757±0.16 N/A 0.645±0.00
ENSG00000154065 ENST00000322980 0.992±0.00 2.108±0.00 0.148±0.00 2.782±0.00 0.974±0.72 0.634±0.58 0.996±0.00 0.610±0.00 N/A 3.570±1.91 N/A 1.349±1.02 0.018±0.00 1.038±0.13
ENST00000585908 N/A 2.925±0.00 N/A N/A 0.295±0.00 0.134±0.00 0.263±0.00 N/A 0.603±0.00 3.216±0.00 N/A 0.300±0.08 0.028±0.00 0.737±0.00
ENST00000586087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587763 N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A 0.781±0.00 0.171±0.00 N/A
ENST00000591280 N/A 0.647±0.00 0.068±0.00 N/A 0.430±0.27 N/A 0.383±0.00 N/A 0.347±0.31 N/A 0.155±0.00 0.085±0.01 0.046±0.00 0.239±0.00
ENST00000591617 N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A
ENST00000592179 N/A 2.270±0.00 N/A 1.631±0.16 1.047±0.00 0.534±0.00 0.879±0.00 0.176±0.15 0.067±0.00 2.844±0.00 0.050±0.00 2.090±0.00 0.031±0.01 0.748±0.00
ENSG00000221389 ENST00000408462 N/A 0.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267301 ENST00000588044 N/A N/A N/A N/A N/A N/A 0.051±0.02 0.038±0.00 N/A 0.074±0.00 0.065±0.00 N/A N/A 0.165±0.00
ENSG00000267752 ENST00000586795 0.137±0.00 0.145±0.00 N/A N/A N/A 0.069±0.00 N/A N/A N/A 0.035±0.00 0.064±0.00 0.047±0.00 N/A 0.066±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024421 ENSMUST00000092070 2.462±1.91 1.495±0.40 0.416±0.03 0.302±0.14 1.017±0.39 4.131±0.95 0.207±0.07 2.184±0.52 0.036±0.02 15.080±0.41 0.076±0.03 1.877±0.82 0.125±0.11 0.086±0.03
ENSMUST00000188815 N/A N/A 4.387±0.41 0.532±0.13 1.132±0.73 2.566±0.56 0.114±0.00 0.834±0.08 0.041±0.03 N/A 0.127±0.05 1.743±0.67 0.418±0.38 0.244±0.07
ENSMUSG00000057766 ENSMUST00000118525 1.252±0.51 0.582±0.10 1.495±0.16 1.381±0.49 0.606±0.13 0.179±0.15 0.472±0.34 1.217±0.16 0.071±0.04 1.837±0.48 0.136±0.04 0.875±0.43 0.379±0.09 0.091±0.01
ENSMUST00000122408 1.794±0.57 1.259±0.21 N/A N/A 1.146±0.62 0.747±0.24 0.958±0.22 1.420±0.29 0.136±0.03 2.207±0.87 0.080±0.00 1.167±0.73 0.805±0.02 0.193±0.09
ENSMUST00000137948 1.128±0.00 0.479±0.00 N/A 1.419±0.00 N/A 0.238±0.10 N/A N/A 0.067±0.05 N/A 0.126±0.05 0.839±0.47 0.321±0.13 0.057±0.01
ENSMUST00000142066 N/A 1.767±0.09 N/A N/A N/A 0.339±0.00 N/A N/A 0.230±0.13 N/A N/A 2.073±0.59 N/A 0.376±0.23
ENSMUSG00000082051 ENSMUST00000119574 N/A 0.122±0.04 0.021±0.00 0.080±0.02 0.050±0.02 0.049±0.00 0.033±0.00 0.087±0.03 0.004±0.00 0.122±0.02 N/A 0.171±0.11 0.026±0.02 N/A
ENSMUSG00000088342 ENSMUST00000157717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.685±0.00 N/A N/A
ENSMUSG00000099663 ENSMUST00000189120 0.180±0.06 0.346±0.00 0.062±0.00 N/A 0.128±0.00 0.494±0.31 0.168±0.06 0.365±0.20 N/A 0.145±0.01 N/A 0.423±0.02 N/A 0.116±0.01
ENSMUSG00000100090 ENSMUST00000187766 0.066±0.02 N/A 0.018±0.00 0.023±0.00 0.152±0.01 0.102±0.00 0.048±0.00 0.105±0.01 0.060±0.03 0.093±0.04 N/A 0.135±0.05 0.011±0.00 0.074±0.03

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