C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476941 TRPC1-002 ENSG00000144935 9606 + 3:142724074-142806428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000476941
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000476941 2.092±1.08 0.448±0.04 0.451±0.00 0.722±0.29 1.157±1.13 0.414±0.05 0.314±0.16 1.339±0.83 0.535±0.00 2.221±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065B CIL_00065B_0002 CGP 3:142724074-142889203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 EXP cation channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0006816 TAS calcium ion transport
GO:0007411 TAS axon guidance
GO:0015279 IEA store-operated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0030017 IEA sarcomere
GO:0034220 TAS ion transmembrane transport
GO:0043034 IEA costamere
GO:0043234 IEA protein complex
GO:0043235 IDA receptor complex
GO:0044325 IPI ion channel binding
GO:0045121 IEA membrane raft
GO:0046541 IEA saliva secretion
GO:0051281 IDA positive regulation of release of sequestered calcium ion into cytosol
GO:0051480 IDA cytosolic calcium ion homeostasis
GO:0051592 IDA response to calcium ion
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189137 Trpc1-004 protein_coding Mus_musculus 0 3834
ENSMUST00000190497 Trpc1-003 nonsense_mediated_decay Mus_musculus 0 2780
ENSMUST00000190604 Trpc1-002 nonsense_mediated_decay Mus_musculus 0 2612
ENSMUST00000053785 Trpc1-001 protein_coding Mus_musculus 0 2612
ENSMUST00000186235 Trpc1-005 protein_coding Mus_musculus 0 953
ENSMUST00000190205 Trpc1-006 retained_intron Mus_musculus 0 695
ENSMUST00000188141 Trpc1-007 retained_intron Mus_musculus 9.99967e-42 176

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