C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273482 TRPC1-001 ENSG00000144935 9606 + 3:142724169-142807888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273482
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273482 0.809±0.00 1.130±0.00 2.211±0.48 0.560±0.00 0.862±0.35 1.545±0.00 1.271±0.00 0.577±0.52 0.461±0.31 0.200±0.00 2.377±0.33 0.291±0.06 1.460±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065B CIL_00065B_0002 CGP 3:142724074-142889203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 EXP cation channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0006816 TAS calcium ion transport
GO:0007411 TAS axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0043235 IDA receptor complex
GO:0044325 IPI ion channel binding
GO:0051281 IDA positive regulation of release of sequestered calcium ion into cytosol
GO:0051480 IDA cytosolic calcium ion homeostasis
GO:0051592 IDA response to calcium ion
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053785 Trpc1-001 protein_coding Mus_musculus 0 3544
ENSMUST00000189137 Trpc1-004 protein_coding Mus_musculus 0 2750
ENSMUST00000190604 Trpc1-002 nonsense_mediated_decay Mus_musculus 0 2614
ENSMUST00000190497 Trpc1-003 nonsense_mediated_decay Mus_musculus 0 2612
ENSMUST00000186235 Trpc1-005 protein_coding Mus_musculus 0 953
ENSMUST00000190205 Trpc1-006 retained_intron Mus_musculus 0 671
ENSMUST00000188141 Trpc1-007 retained_intron Mus_musculus 1.99993e-41 176

Loading