C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189378 Apbb1-002 ENSMUSG00000037032 10090 - 7:105558503-105581491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderKidneyLiverMuscleOvaryPlacentaENSMUST00000189378
Transcript ID Adipose Bladder Kidney Liver Muscle Ovary Placenta
ENSMUST00000189378 1.904±0.57 7.889±0.09 1.840±0.62 0.514±0.26 1.185±0.45 2.177±0.89 4.816±2.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AE CIL_0004AE_0002 CGP 7:105554360-105581653
CIL_0004N8 CIL_0004N8_0002 CGP 7:105558483-105600116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0001764 IGI neuron migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006302 IMP double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007050 IDA cell cycle arrest
GO:0007411 IGI axon guidance
GO:0008134 IDA transcription factor binding
GO:0008542 IMP visual learning
GO:0030027 ISS lamellipodium
GO:0030048 NAS actin filament-based movement
GO:0030198 IGI extracellular matrix organization
GO:0030308 IDA negative regulation of cell growth
GO:0030426 ISS growth cone
GO:0035035 NAS histone acetyltransferase binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0043967 ISS histone H4 acetylation
GO:0045202 ISS synapse
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045739 IMP positive regulation of DNA repair
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0050760 IDA negative regulation of thymidylate synthase biosynthetic process
GO:0050821 NAS protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299402 APBB1-002 protein_coding Homo_sapiens 0 3118
ENST00000311051 APBB1-001 protein_coding Homo_sapiens 0 3055
ENST00000389906 APBB1-201 protein_coding Homo_sapiens 0 3155
ENST00000524626 APBB1-010 retained_intron Homo_sapiens 0 1631
ENST00000526240 APBB1-020 processed_transcript Homo_sapiens 0 856
ENST00000526925 APBB1-017 retained_intron Homo_sapiens 0 1079
ENST00000529519 APBB1-006 protein_coding Homo_sapiens 0 1415
ENST00000529778 APBB1-009 retained_intron Homo_sapiens 0 324
ENST00000529890 APBB1-004 protein_coding Homo_sapiens 0 1190
ENST00000530885 APBB1-007 protein_coding Homo_sapiens 0 2019
ENST00000532020 APBB1-026 protein_coding Homo_sapiens 0 479
ENST00000533139 APBB1-003 retained_intron Homo_sapiens 0 1221
ENST00000533407 APBB1-016 retained_intron Homo_sapiens 0 1079
ENST00000534188 APBB1-008 retained_intron Homo_sapiens 0 761
ENST00000608394 APBB1-005 protein_coding Homo_sapiens 0 2167
ENST00000608435 APBB1-011 non_stop_decay Homo_sapiens 0 2636
ENST00000608645 APBB1-025 protein_coding Homo_sapiens 0 2054
ENST00000608655 APBB1-024 protein_coding Homo_sapiens 0 2167
ENST00000608704 APBB1-014 protein_coding Homo_sapiens 0 2167
ENST00000609331 APBB1-018 protein_coding Homo_sapiens 0 1995
ENST00000609360 APBB1-023 protein_coding Homo_sapiens 0 3090
ENST00000610474 APBB1-202 protein_coding Homo_sapiens 0 2167
ENST00000618005 APBB1-203 protein_coding Homo_sapiens 0 2165
ENST00000621678 APBB1-204 protein_coding Homo_sapiens 0 2165

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