C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000609360 APBB1-023 ENSG00000166313 9606 - 11:6395125-6419070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000609360
Transcript ID Brain
ENST00000609360 25.962±19.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AE CIL_0004AE_0001 CGP 11:6390431-6419414
CIL_0004N8 CIL_0004N8_0001 CGP 11:6395124-6442617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IPI beta-amyloid binding
GO:0001764 IEA neuron migration
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006302 IEA double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007050 ISS cell cycle arrest
GO:0007165 NAS signal transduction
GO:0007409 NAS axonogenesis
GO:0007411 IEA axon guidance
GO:0008134 ISS transcription factor binding
GO:0008542 IEA visual learning
GO:0030027 IDA lamellipodium
GO:0030198 IEA extracellular matrix organization
GO:0030308 ISS negative regulation of cell growth
GO:0030426 IDA growth cone
GO:0042393 IPI histone binding
GO:0043065 IDA positive regulation of apoptotic process
GO:0043967 ISS histone H4 acetylation
GO:0045202 IDA synapse
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045739 IEA positive regulation of DNA repair
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050760 ISS negative regulation of thymidylate synthase biosynthetic process
GO:0070064 IPI proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191601 Apbb1-003 protein_coding Mus_musculus 0 3158
ENSMUST00000189378 Apbb1-002 protein_coding Mus_musculus 0 3090
ENSMUST00000191011 Apbb1-001 protein_coding Mus_musculus 0 3057
ENSMUST00000081165 Apbb1-201 protein_coding Mus_musculus 0 3053
ENSMUST00000189072 Apbb1-004 protein_coding Mus_musculus 0 2235
ENSMUST00000190369 Apbb1-005 protein_coding Mus_musculus 0 2235
ENSMUST00000188368 Apbb1-008 protein_coding Mus_musculus 0 2235
ENSMUST00000187057 Apbb1-007 protein_coding Mus_musculus 0 1991
ENSMUST00000188001 Apbb1-006 retained_intron Mus_musculus 0 1879
ENSMUST00000189265 Apbb1-018 protein_coding Mus_musculus 0 1384
ENSMUST00000188440 Apbb1-017 protein_coding Mus_musculus 0 1018
ENSMUST00000187721 Apbb1-012 protein_coding Mus_musculus 0 837
ENSMUST00000187683 Apbb1-011 protein_coding Mus_musculus 0 761
ENSMUST00000187051 Apbb1-010 protein_coding Mus_musculus 0 603
ENSMUST00000191250 Apbb1-015 retained_intron Mus_musculus 0 590
ENSMUST00000186814 Apbb1-014 retained_intron Mus_musculus 0 558
ENSMUST00000186868 Apbb1-009 protein_coding Mus_musculus 0 527
ENSMUST00000188726 Apbb1-016 protein_coding Mus_musculus 0 514
ENSMUST00000190961 Apbb1-013 retained_intron Mus_musculus 0 479
ENSMUST00000087256 Apbb2-201 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000160063 Apbb2-017 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000162366 Apbb2-008 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000160870 Apbb2-007 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000160185 Apbb2-006 retained_intron Mus_musculus 0.000000000003 79
ENSMUST00000162401 Apbb2-005 retained_intron Mus_musculus 0.000000000003 79
ENSMUST00000159512 Apbb2-003 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000159786 Apbb2-001 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000162349 Apbb2-004 protein_coding Mus_musculus 0.000000000003 79

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