C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189862 Ppfia4-005 ENSMUSG00000026458 10090 - 1:134296789-134304808 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000189862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000189862 0.704±0.33 0.576±0.26 0.772±0.17 5.410±1.36 1.356±0.84 0.920±0.34 0.351±0.09 0.245±0.02 0.196±0.14 1.815±0.36 0.160±0.08 0.604±0.23 0.402±0.06 0.510±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272198 PPFIA4-002 protein_coding Homo_sapiens 0 881
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 881
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 881
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 881
ENST00000486360 PPFIA4-003 retained_intron Homo_sapiens 0 656
ENST00000594656 PPFIA4-011 retained_intron Homo_sapiens 3e-26 122
ENST00000597023 PPFIA4-010 retained_intron Homo_sapiens 0 381
ENST00000599966 PPFIA4-008 protein_coding Homo_sapiens 0 881
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 806

Loading