C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272198 PPFIA4-002 ENSG00000143847 9606 + 1:203051183-203078736 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TW CIL_0000TW_0002 CGP 1:203007386-203078740
CIL_0000TV CIL_0000TV_0002 CGP 1:203026498-203086036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 TAS intracellular
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0045202 ISS synapse
GO:0048786 TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189361 Ppfia4-003 protein_coding Mus_musculus 0 2900
ENSMUST00000168515 Ppfia4-001 protein_coding Mus_musculus 0 2676
ENSMUST00000186730 Ppfia4-007 protein_coding Mus_musculus 0 1738
ENSMUST00000186553 Ppfia4-006 retained_intron Mus_musculus 0 1147
ENSMUST00000189862 Ppfia4-005 retained_intron Mus_musculus 0 881
ENSMUST00000186964 Ppfia4-004 processed_transcript Mus_musculus 0 660
ENSDART00000112567 ppfia4-001 protein_coding Danio_rerio 0 627
ENSDART00000034834 ppfia2-201 protein_coding Danio_rerio 0 521
ENSDART00000142140 ppfia2-001 protein_coding Danio_rerio 0 521

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