C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000272198  |
PPFIA4-002 |
ENSG00000143847 |
9606 | + |
1:203051183-203078736  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0000TW | CIL_0000TW_0002 | CGP | 1:203007386-203078740 |
| CIL_0000TV | CIL_0000TV_0002 | CGP | 1:203026498-203086036 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI:IEA | protein binding |
| GO:0005622 | TAS | intracellular |
| GO:0005737 | IEA | cytoplasm |
| GO:0007160 | IEA | cell-matrix adhesion |
| GO:0007165 | IEA | signal transduction |
| GO:0045202 | ISS | synapse |
| GO:0048786 | TAS | presynaptic active zone |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000189361
|
Ppfia4-003 | protein_coding | Mus_musculus | 0 | 2900 |
|
ENSMUST00000168515
|
Ppfia4-001 | protein_coding | Mus_musculus | 0 | 2676 |
|
ENSMUST00000186730
|
Ppfia4-007 | protein_coding | Mus_musculus | 0 | 1738 |
|
ENSMUST00000186553
|
Ppfia4-006 | retained_intron | Mus_musculus | 0 | 1147 |
|
ENSMUST00000189862
|
Ppfia4-005 | retained_intron | Mus_musculus | 0 | 881 |
|
ENSMUST00000186964
|
Ppfia4-004 | processed_transcript | Mus_musculus | 0 | 660 |
|
ENSDART00000112567
|
ppfia4-001 | protein_coding | Danio_rerio | 0 | 627 |
|
ENSDART00000034834
|
ppfia2-201 | protein_coding | Danio_rerio | 0 | 521 |
|
ENSDART00000142140
|
ppfia2-001 | protein_coding | Danio_rerio | 0 | 521 |
