C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486360 PPFIA4-003 ENSG00000143847 9606 + 1:203062959-203078735 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungOvaryENST00000486360
Transcript ID Adipose Breast Heart Kidney Liver Lung Ovary
ENST00000486360 0.009±0.00 0.040±0.00 0.232±0.00 0.064±0.00 0.023±0.00 0.129±0.00 0.046±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TW CIL_0000TW_0002 CGP 1:203007386-203078740
CIL_0000TV CIL_0000TV_0002 CGP 1:203026498-203086036

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186553 Ppfia4-006 retained_intron Mus_musculus 0 896
ENSMUST00000189361 Ppfia4-003 protein_coding Mus_musculus 0 896
ENSMUST00000168515 Ppfia4-001 protein_coding Mus_musculus 0 896
ENSMUST00000186730 Ppfia4-007 protein_coding Mus_musculus 0 891
ENSMUST00000186964 Ppfia4-004 processed_transcript Mus_musculus 0 658
ENSMUST00000189862 Ppfia4-005 retained_intron Mus_musculus 0 656
ENSDART00000112567 ppfia4-001 protein_coding Danio_rerio 0 320
ENSDART00000034834 ppfia2-201 protein_coding Danio_rerio 0 313
ENSDART00000142140 ppfia2-001 protein_coding Danio_rerio 0 313

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