C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026458 Ppfia4 10090 - 1:134296783-134332928 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000168515 Ppfia4-001 134296783-134332928 protein_coding
  ENSMUST00000186553 Ppfia4-006 134298381-134311598 retained_intron
  ENSMUST00000186730 Ppfia4-007 134296784-134327266 protein_coding
  ENSMUST00000186964 Ppfia4-004 134296785-134304846 processed_transcript
  ENSMUST00000189361 Ppfia4-003 134297501-134332928 protein_coding
  ENSMUST00000189862 Ppfia4-005 134296789-134304808 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168515ENSMUST00000186553ENSMUST00000186730ENSMUST00000186964ENSMUST00000189361ENSMUST00000189862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168515 N/A N/A N/A 28.426±0.00 N/A N/A N/A N/A N/A N/A 0.079±0.00 0.146±0.02 0.336±0.00 N/A
ENSMUST00000186553 1.481±0.88 2.664±0.84 N/A 6.047±0.00 4.063±1.90 2.320±1.03 0.950±0.26 0.728±0.23 0.492±0.17 2.160±0.26 0.416±0.10 2.685±0.88 1.055±0.36 1.497±0.08
ENSMUST00000186730 N/A N/A 0.459±0.09 N/A N/A 0.227±0.08 N/A 0.097±0.00 0.134±0.00 N/A 0.095±0.00 0.488±0.00 0.567±0.08 0.729±0.23
ENSMUST00000186964 N/A 0.425±0.08 N/A N/A N/A 0.567±0.13 N/A 0.183±0.00 0.161±0.04 N/A 0.195±0.05 0.481±0.18 N/A N/A
ENSMUST00000189361 1.019±0.05 N/A N/A 3.792±0.00 N/A 0.202±0.07 0.241±0.00 N/A N/A N/A 0.110±0.07 0.422±0.20 0.430±0.00 0.912±0.18
ENSMUST00000189862 0.704±0.33 0.576±0.26 0.772±0.17 5.410±1.36 1.356±0.84 0.920±0.34 0.351±0.09 0.245±0.02 0.196±0.14 1.815±0.36 0.160±0.08 0.604±0.23 0.402±0.06 0.510±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0045202 IDA synapse
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053205 ppfia4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein_coding Danio_rerio
ENSG00000143847 PPFIA4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein_coding Homo_sapiens

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