C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191011 Apbb1-001 ENSMUSG00000037032 10090 - 7:105558483-105581653 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000191011
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000191011 2.102±0.88 6.588±0.04 10.391±1.04 1.029±0.03 1.456±0.36 11.062±1.56 1.616±0.45 0.305±0.14 10.585±1.73 1.613±0.57 2.667±1.62 5.466±2.38 1.154±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AE CIL_0004AE_0002 CGP 7:105554360-105581653
CIL_0004N8 CIL_0004N8_0002 CGP 7:105558483-105600116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0001764 IGI neuron migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006302 IMP double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007050 IDA cell cycle arrest
GO:0007411 IGI axon guidance
GO:0008134 IDA transcription factor binding
GO:0008542 IMP visual learning
GO:0030027 ISS lamellipodium
GO:0030048 NAS actin filament-based movement
GO:0030198 IGI extracellular matrix organization
GO:0030308 IDA negative regulation of cell growth
GO:0030426 ISS growth cone
GO:0035035 NAS histone acetyltransferase binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0043967 ISS histone H4 acetylation
GO:0045202 ISS synapse
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045739 IMP positive regulation of DNA repair
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0050760 IDA negative regulation of thymidylate synthase biosynthetic process
GO:0050821 NAS protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299402 APBB1-002 protein_coding Homo_sapiens 0 3085
ENST00000311051 APBB1-001 protein_coding Homo_sapiens 0 3079
ENST00000389906 APBB1-201 protein_coding Homo_sapiens 0 3059
ENST00000524626 APBB1-010 retained_intron Homo_sapiens 0 1631
ENST00000526240 APBB1-020 processed_transcript Homo_sapiens 0 885
ENST00000526925 APBB1-017 retained_intron Homo_sapiens 0 1079
ENST00000529519 APBB1-006 protein_coding Homo_sapiens 0 1415
ENST00000529778 APBB1-009 retained_intron Homo_sapiens 0 324
ENST00000529890 APBB1-004 protein_coding Homo_sapiens 0 1190
ENST00000530885 APBB1-007 protein_coding Homo_sapiens 0 2019
ENST00000532020 APBB1-026 protein_coding Homo_sapiens 0 479
ENST00000533139 APBB1-003 retained_intron Homo_sapiens 0 1221
ENST00000533407 APBB1-016 retained_intron Homo_sapiens 0 1079
ENST00000534188 APBB1-008 retained_intron Homo_sapiens 0 761
ENST00000608394 APBB1-005 protein_coding Homo_sapiens 0 2169
ENST00000608435 APBB1-011 non_stop_decay Homo_sapiens 0 2571
ENST00000608645 APBB1-025 protein_coding Homo_sapiens 0 2054
ENST00000608655 APBB1-024 protein_coding Homo_sapiens 0 2196
ENST00000608704 APBB1-014 protein_coding Homo_sapiens 0 2196
ENST00000609331 APBB1-018 protein_coding Homo_sapiens 0 1995
ENST00000609360 APBB1-023 protein_coding Homo_sapiens 0 3057
ENST00000610474 APBB1-202 protein_coding Homo_sapiens 0 2198
ENST00000618005 APBB1-203 protein_coding Homo_sapiens 0 2196
ENST00000621678 APBB1-204 protein_coding Homo_sapiens 0 2196

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