C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CLOCK interacting protein, circadian
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191463 Cipc-009 ENSMUSG00000034157 10090 + 12:86952657-86962833 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000191463
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000191463 4.130±0.87 16.157±1.56 6.752±0.73 22.674±2.71 4.519±0.00 4.564±1.30 5.843±1.13 5.328±1.77 12.033±3.33 1.688±0.02 7.864±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VF CIL_0007VF_0002 VISTA 12:86500572-87103602
CIL_0008WP CIL_0008WP_0002 VISTA 12:86510598-87113301
CIL_000867 CIL_000867_0002 VISTA 12:86515545-87117582
CIL_0007VT CIL_0007VT_0002 VISTA 12:86594665-87199694
CIL_0003P0 CIL_0003P0_0002 CGP 12:86880703-86965362
CIL_00071S CIL_00071S_0002 CGP 12:86947043-86988676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0042754 IMP negative regulation of circadian rhythm
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361786 CIPC-001 protein_coding Homo_sapiens 0 1254
ENST00000554447 CIPC-007 protein_coding Homo_sapiens 0 488
ENST00000554658 CIPC-005 protein_coding Homo_sapiens 0 433
ENST00000555200 CIPC-008 protein_coding Homo_sapiens 0 455
ENST00000555437 CIPC-002 protein_coding Homo_sapiens 0 198
ENST00000555611 CIPC-004 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000557115 CIPC-006 protein_coding Homo_sapiens 0 516

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