C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C (autosomal recessive, severe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000005226 USH1C-006 ENSG00000006611 9606 - 11:17494332-17544307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENST00000005226
Transcript ID Adrenal
ENST00000005226 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZZ CIL_0003ZZ_0001 CGP 11:17392885-17544416
CIL_0003ZY CIL_0003ZY_0001 CGP 11:17493895-17647150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 IMP G2/M transition of mitotic cell cycle
GO:0001750 IEA photoreceptor outer segment
GO:0001917 IEA photoreceptor inner segment
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0007605 IMP sensory perception of sound
GO:0030046 IEA parallel actin filament bundle assembly
GO:0030507 IDA spectrin binding
GO:0032029 IEA myosin tail binding
GO:0032420 TAS stereocilium
GO:0042472 IEA inner ear morphogenesis
GO:0042491 IEA auditory receptor cell differentiation
GO:0045177 IDA apical part of cell
GO:0045202 IEA synapse
GO:0045494 IMP photoreceptor cell maintenance
GO:0050885 IEA neuromuscular process controlling balance
GO:0050953 IMP sensory perception of light stimulus
GO:0050957 IMP equilibrioception
GO:0051017 IEA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009667 Ush1c-001 protein_coding Mus_musculus 0 3240
ENSMUST00000154292 Ush1c-003 protein_coding Mus_musculus 0 3221
ENSMUST00000143155 Ush1c-002 nonsense_mediated_decay Mus_musculus 0 3134
ENSMUST00000078680 Ush1c-004 protein_coding Mus_musculus 0 1498
ENSMUST00000176371 Ush1c-008 protein_coding Mus_musculus 0 1458
ENSMUST00000177212 Ush1c-007 protein_coding Mus_musculus 0 1011

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