C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003ZY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000006611-ENSG00000188162 CGP 9606 11:17493895-17647150
GeneTranscriptPositionBiotype
ENSG00000006611 (USH1C)
Usher syndrome 1C (autosomal recessive, severe) 		ENST00000005226 (USH1C-006) 17494332-17544307 protein_coding
ENST00000318024 (USH1C-001) 17493895-17544416 protein_coding
ENST00000526181 (USH1C-008) 17522883-17533874 protein_coding
ENST00000526313 (USH1C-002) 17493895-17544402 nonsense_mediated_decay
ENST00000527020 (USH1C-003) 17493900-17544400 protein_coding
ENST00000527551 (USH1C-010) 17494162-17496913 retained_intron
ENST00000527720 (USH1C-005) 17493897-17533510 protein_coding
ENST00000529563 (USH1C-009) 17493965-17516622 processed_transcript
ENST00000530700 (USH1C-011) 17514441-17520962 processed_transcript
ENST00000534556 (USH1C-012) 17501072-17502049 retained_intron
ENST00000624811 (USH1C-007) 17493900-17495093 TEC
ENSG00000188162 (OTOG)
otogelin 		ENST00000342528 (OTOG-001) 17578264-17638934 protein_coding
ENST00000399391 (OTOG-201) 17547373-17645944 protein_coding
ENST00000399397 (OTOG-002) 17547828-17647150 protein_coding
ENST00000428619 (OTOG-004) 17548177-17553444 protein_coding
ENST00000485669 (OTOG-005) 17555700-17558602 retained_intron
ENST00000498332 (OTOG-003) 17547927-17570604 retained_intron
CIL_0003ZY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030838-ENSMUSG00000009487 CGP 10090 7:46195350-46311434
GeneTranscriptPositionBiotype
ENSMUSG00000009487 (Otog)
otogelin 		ENSMUST00000164538 (Otog-201) 46240987-46311434 protein_coding
ENSMUSG00000030838 (Ush1c)
Usher syndrome 1C 		ENSMUST00000009667 (Ush1c-001) 46195357-46238503 protein_coding
ENSMUST00000078680 (Ush1c-004) 46195350-46238492 protein_coding
ENSMUST00000129266 (Ush1c-006) 46195670-46201770 retained_intron
ENSMUST00000143155 (Ush1c-002) 46195357-46238490 nonsense_mediated_decay
ENSMUST00000148527 (Ush1c-005) 46201026-46219767 processed_transcript
ENSMUST00000154292 (Ush1c-003) 46195631-46238464 protein_coding
ENSMUST00000176371 (Ush1c-008) 46195651-46230314 protein_coding
ENSMUST00000177212 (Ush1c-007) 46195650-46238498 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003ZY_0001ENSG00000006611ENST00000005226ENST00000318024ENST00000526181ENST00000526313ENST00000527020ENST00000527551ENST00000527720ENST00000529563ENST00000530700ENST00000534556ENST00000624811ENSG00000188162ENST00000342528ENST00000399391ENST00000399397ENST00000428619ENST00000485669ENST00000498332CIL_0003ZY_0002ENSMUSG00000009487ENSMUST00000164538ENSMUSG00000030838ENSMUST00000009667ENSMUST00000078680ENSMUST00000129266ENSMUST00000143155ENSMUST00000148527ENSMUST00000154292ENSMUST00000176371ENSMUST00000177212
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003ZY_0001ENSG00000006611ENST00000005226ENST00000318024ENST00000526181ENST00000526313ENST00000527020ENST00000529563ENST00000534556ENST00000624811ENSG00000188162ENST00000342528ENST00000399391ENST00000399397ENST00000428619ENST00000485669ENST00000498332CIL_0003ZY_0002ENSMUSG00000009487ENSMUST00000164538ENSMUSG00000030838ENSMUST00000009667ENSMUST00000078680ENSMUST00000129266ENSMUST00000143155ENSMUST00000148527ENSMUST00000154292ENSMUST00000176371ENSMUST00000177212
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006611 ENST00000005226 N/A 0.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000318024 N/A 0.714±0.00 N/A 3.328±2.47 0.684±0.00 2.528±0.63 N/A 12.746±0.00 N/A N/A N/A 8.488±11.23 N/A 0.823±0.00
ENST00000526181 0.019±0.00 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526313 N/A N/A 1.327±0.00 0.319±0.00 N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A
ENST00000527020 N/A N/A N/A N/A 0.166±0.13 1.444±0.13 N/A 7.911±0.00 N/A 0.045±0.00 N/A 3.014±0.00 N/A N/A
ENST00000527551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529563 N/A N/A N/A 23.374±0.00 N/A 5.833±0.00 N/A 13.129±0.00 N/A 0.128±0.00 N/A 0.205±0.00 N/A 1.178±0.75
ENST00000530700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A
ENST00000624811 0.083±0.00 N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.550±0.00 0.158±0.00 N/A N/A N/A N/A
ENSG00000188162 ENST00000342528 0.037±0.00 0.035±0.00 N/A 0.013±0.00 0.011±0.00 0.084±0.00 N/A N/A N/A 0.010±0.00 0.021±0.00 0.032±0.00 N/A 0.147±0.11
ENST00000399391 N/A 0.003±0.00 N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.230±0.14
ENST00000399397 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.269±0.00
ENST00000428619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A
ENST00000485669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.01 N/A N/A
ENST00000498332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.01 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009487 ENSMUST00000164538 N/A 0.012±0.00 0.001±0.00 0.030±0.01 0.004±0.00 0.016±0.01 0.005±0.00 0.010±0.00 0.004±0.00 N/A 0.157±0.10 0.005±0.00 0.007±0.00 0.088±0.05
ENSMUSG00000030838 ENSMUST00000009667 N/A N/A N/A N/A 0.014±0.00 N/A N/A 1.948±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000078680 N/A 0.029±0.00 0.004±0.00 0.039±0.00 0.113±0.00 34.853±4.99 N/A 23.294±0.67 0.058±0.03 0.139±0.10 0.451±0.09 0.248±0.00 0.746±0.48 1.120±0.62
ENSMUST00000129266 N/A N/A N/A N/A 0.045±0.01 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143155 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A 0.061±0.00 N/A
ENSMUST00000148527 N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENSMUST00000154292 N/A 0.024±0.01 N/A N/A N/A 5.305±0.00 N/A N/A N/A 0.018±0.00 N/A 0.062±0.02 N/A 0.241±0.00
ENSMUST00000176371 N/A N/A 0.009±0.00 0.152±0.00 N/A N/A N/A N/A 0.021±0.00 0.044±0.00 N/A 0.070±0.01 0.494±0.00 0.632±0.19
ENSMUST00000177212 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A 0.028±0.01 N/A N/A 0.145±0.06 0.201±0.13 0.866±0.00

Loading