C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078680 Ush1c-004 ENSMUSG00000030838 10090 - 7:46195350-46238492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078680
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078680 0.029±0.00 0.004±0.00 0.039±0.00 0.113±0.00 34.853±4.99 23.294±0.67 0.058±0.03 0.139±0.10 0.451±0.09 0.248±0.00 0.746±0.48 1.120±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZZ CIL_0003ZZ_0002 CGP 7:46104523-46238503
CIL_0003ZY CIL_0003ZY_0002 CGP 7:46195350-46311434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0007605 IMP sensory perception of sound
GO:0030046 IDA parallel actin filament bundle assembly
GO:0030507 ISO spectrin binding
GO:0032029 ISO myosin tail binding
GO:0032420 IDA stereocilium
GO:0042472 IMP inner ear morphogenesis
GO:0042491 IMP auditory receptor cell differentiation
GO:0045202 IDA synapse
GO:0050885 IMP neuromuscular process controlling balance
GO:0051017 IDA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000005226 USH1C-006 protein_coding Homo_sapiens 0 1498
ENST00000318024 USH1C-001 protein_coding Homo_sapiens 0 1991
ENST00000526181 USH1C-008 protein_coding Homo_sapiens 0 1094
ENST00000526313 USH1C-002 nonsense_mediated_decay Homo_sapiens 0 1509
ENST00000527020 USH1C-003 protein_coding Homo_sapiens 0 1022
ENST00000527720 USH1C-005 protein_coding Homo_sapiens 0 1940
ENST00000529563 USH1C-009 processed_transcript Homo_sapiens 0 462

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