C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143155 Ush1c-002 ENSMUSG00000030838 10090 - 7:46195357-46238490 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENSMUST00000143155
Transcript ID Liver Placenta
ENSMUST00000143155 0.007±0.00 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZZ CIL_0003ZZ_0002 CGP 7:46104523-46238503
CIL_0003ZY CIL_0003ZY_0002 CGP 7:46195350-46311434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001917 IDA photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007605 IMP sensory perception of sound
GO:0030046 IDA parallel actin filament bundle assembly
GO:0030507 ISO spectrin binding
GO:0032029 ISO myosin tail binding
GO:0032420 IDA stereocilium
GO:0042472 IMP inner ear morphogenesis
GO:0042491 IMP auditory receptor cell differentiation
GO:0045202 IDA synapse
GO:0050885 IMP neuromuscular process controlling balance
GO:0051017 IDA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000005226 USH1C-006 protein_coding Homo_sapiens 0 3134
ENST00000318024 USH1C-001 protein_coding Homo_sapiens 0 1509
ENST00000526181 USH1C-008 protein_coding Homo_sapiens 0 1094
ENST00000526313 USH1C-002 nonsense_mediated_decay Homo_sapiens 0 1509
ENST00000527020 USH1C-003 protein_coding Homo_sapiens 0 1022
ENST00000527720 USH1C-005 protein_coding Homo_sapiens 0 1458
ENST00000529563 USH1C-009 processed_transcript Homo_sapiens 0 436
ENST00000530700 USH1C-011 processed_transcript Homo_sapiens 0.000000000000009 84

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