C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003ZZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000006071-ENSG00000006611 CGP 9606 11:17392885-17544416
GeneTranscriptPositionBiotype
ENSG00000006071 (ABCC8)
ATP-binding cassette, sub-family C (CFTR/MRP), member 8 		ENST00000302539 (ABCC8-201) 17392886-17476845 protein_coding
ENST00000389817 (ABCC8-001) 17392885-17476845 protein_coding
ENST00000524561 (ABCC8-010) 17402735-17407181 retained_intron
ENST00000525022 (ABCC8-014) 17393041-17395915 retained_intron
ENST00000526002 (ABCC8-004) 17430822-17443433 retained_intron
ENST00000526037 (ABCC8-018) 17392885-17395780 retained_intron
ENST00000526168 (ABCC8-013) 17392988-17395917 nonsense_mediated_decay
ENST00000526921 (ABCC8-008) 17406677-17413552 retained_intron
ENST00000527905 (ABCC8-002) 17396811-17476819 nonsense_mediated_decay
ENST00000528202 (ABCC8-005) 17430597-17442791 processed_transcript
ENST00000528374 (ABCC8-012) 17395921-17404538 protein_coding
ENST00000529967 (ABCC8-007) 17406883-17414570 retained_intron
ENST00000530147 (ABCC8-009) 17410246-17413536 retained_intron
ENST00000531137 (ABCC8-011) 17396935-17404561 retained_intron
ENST00000531642 (ABCC8-015) 17392885-17395885 nonsense_mediated_decay
ENST00000531891 (ABCC8-016) 17396933-17402678 nonsense_mediated_decay
ENST00000531911 (ABCC8-006) 17410597-17428093 retained_intron
ENST00000532220 (ABCC8-017) 17395913-17397508 retained_intron
ENST00000532728 (ABCC8-003) 17430564-17476807 retained_intron
ENST00000612903 (ABCC8-202) 17470190-17476778 protein_coding
ENSG00000006611 (USH1C)
Usher syndrome 1C (autosomal recessive, severe) 		ENST00000005226 (USH1C-006) 17494332-17544307 protein_coding
ENST00000318024 (USH1C-001) 17493895-17544416 protein_coding
ENST00000526181 (USH1C-008) 17522883-17533874 protein_coding
ENST00000526313 (USH1C-002) 17493895-17544402 nonsense_mediated_decay
ENST00000527020 (USH1C-003) 17493900-17544400 protein_coding
ENST00000527551 (USH1C-010) 17494162-17496913 retained_intron
ENST00000527720 (USH1C-005) 17493897-17533510 protein_coding
ENST00000529563 (USH1C-009) 17493965-17516622 processed_transcript
ENST00000530700 (USH1C-011) 17514441-17520962 processed_transcript
ENST00000534556 (USH1C-012) 17501072-17502049 retained_intron
ENST00000624811 (USH1C-007) 17493900-17495093 TEC
ENSG00000255035 (SDHCP4)
succinate dehydrogenase complex, subunit C pseudogene 4 		ENST00000532834 (SDHCP4-001) 17435672-17436181 processed_pseudogene
CIL_0003ZZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040136-ENSMUSG00000030838 CGP 10090 7:46104523-46238503
GeneTranscriptPositionBiotype
ENSMUSG00000030838 (Ush1c)
Usher syndrome 1C 		ENSMUST00000009667 (Ush1c-001) 46195357-46238503 protein_coding
ENSMUST00000078680 (Ush1c-004) 46195350-46238492 protein_coding
ENSMUST00000129266 (Ush1c-006) 46195670-46201770 retained_intron
ENSMUST00000143155 (Ush1c-002) 46195357-46238490 nonsense_mediated_decay
ENSMUST00000148527 (Ush1c-005) 46201026-46219767 processed_transcript
ENSMUST00000154292 (Ush1c-003) 46195631-46238464 protein_coding
ENSMUST00000176371 (Ush1c-008) 46195651-46230314 protein_coding
ENSMUST00000177212 (Ush1c-007) 46195650-46238498 protein_coding
ENSMUSG00000040136 (Abcc8)
ATP-binding cassette, sub-family C (CFTR/MRP), member 8 		ENSMUST00000033123 (Abcc8-201) 46104523-46180033 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003ZZ_0001ENSG00000006071ENST00000302539ENST00000389817ENST00000524561ENST00000525022ENST00000526002ENST00000526037ENST00000526168ENST00000526921ENST00000527905ENST00000528202ENST00000528374ENST00000529967ENST00000530147ENST00000531137ENST00000531642ENST00000531891ENST00000531911ENST00000532220ENST00000532728ENST00000612903ENSG00000006611ENST00000005226ENST00000318024ENST00000526181ENST00000526313ENST00000527020ENST00000527551ENST00000527720ENST00000529563ENST00000530700ENST00000534556ENST00000624811ENSG00000255035ENST00000532834CIL_0003ZZ_0002ENSMUSG00000030838ENSMUST00000009667ENSMUST00000078680ENSMUST00000129266ENSMUST00000143155ENSMUST00000148527ENSMUST00000154292ENSMUST00000176371ENSMUST00000177212ENSMUSG00000040136ENSMUST00000033123
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003ZZ_0001ENSG00000006071ENST00000302539ENST00000389817ENST00000524561ENST00000525022ENST00000526002ENST00000526037ENST00000526168ENST00000526921ENST00000527905ENST00000529967ENST00000531137ENST00000531642ENST00000531891ENST00000531911ENST00000532220ENST00000532728ENSG00000006611ENST00000005226ENST00000318024ENST00000526181ENST00000526313ENST00000527020ENST00000529563ENST00000534556ENST00000624811ENSG00000255035ENST00000532834CIL_0003ZZ_0002ENSMUSG00000030838ENSMUST00000009667ENSMUST00000078680ENSMUST00000129266ENSMUST00000143155ENSMUST00000148527ENSMUST00000154292ENSMUST00000176371ENSMUST00000177212ENSMUSG00000040136ENSMUST00000033123
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006071 ENST00000302539 N/A N/A N/A 0.863±0.16 N/A N/A 0.132±0.10 N/A 0.009±0.00 N/A N/A 0.037±0.00 0.019±0.00 0.192±0.02
ENST00000389817 N/A 0.522±0.00 N/A 1.009±0.00 N/A N/A 0.037±0.00 N/A 0.008±0.00 N/A N/A 0.036±0.00 0.119±0.09 N/A
ENST00000524561 N/A N/A N/A N/A 0.293±0.00 N/A N/A N/A 0.165±0.00 N/A N/A 0.140±0.00 N/A N/A
ENST00000525022 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A
ENST00000526002 N/A N/A N/A N/A N/A N/A 0.527±0.00 N/A 0.121±0.00 0.379±0.25 N/A N/A 0.253±0.00 N/A
ENST00000526037 N/A N/A N/A N/A N/A 0.991±0.00 N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A
ENST00000526168 N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A 1.217±0.00 N/A 0.098±0.00 N/A N/A
ENST00000526921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 0.308±0.00 N/A
ENST00000527905 N/A N/A N/A 1.643±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529967 0.102±0.00 N/A N/A N/A 0.185±0.00 N/A N/A 0.104±0.00 N/A 0.467±0.00 0.244±0.00 0.189±0.00 0.088±0.02 N/A
ENST00000530147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531137 N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531642 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A 0.152±0.00 N/A
ENST00000531891 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.05 N/A N/A 0.266±0.00 N/A N/A
ENST00000531911 0.171±0.00 N/A N/A N/A N/A 0.261±0.00 N/A 0.133±0.00 N/A N/A N/A N/A N/A N/A
ENST00000532220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 0.119±0.00 N/A
ENST00000532728 N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 0.112±0.00 N/A
ENST00000612903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000006611 ENST00000005226 N/A 0.170±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000318024 N/A 0.714±0.00 N/A 3.328±2.47 0.684±0.00 2.528±0.63 N/A 12.746±0.00 N/A N/A N/A 8.488±11.23 N/A 0.823±0.00
ENST00000526181 0.019±0.00 N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526313 N/A N/A 1.327±0.00 0.319±0.00 N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A
ENST00000527020 N/A N/A N/A N/A 0.166±0.13 1.444±0.13 N/A 7.911±0.00 N/A 0.045±0.00 N/A 3.014±0.00 N/A N/A
ENST00000527551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529563 N/A N/A N/A 23.374±0.00 N/A 5.833±0.00 N/A 13.129±0.00 N/A 0.128±0.00 N/A 0.205±0.00 N/A 1.178±0.75
ENST00000530700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A
ENST00000624811 0.083±0.00 N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.550±0.00 0.158±0.00 N/A N/A N/A N/A
ENSG00000255035 ENST00000532834 0.031±0.00 0.032±0.00 N/A 0.072±0.00 0.643±0.00 N/A N/A 1.477±0.00 0.028±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030838 ENSMUST00000009667 N/A N/A N/A N/A 0.014±0.00 N/A N/A 1.948±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000078680 N/A 0.029±0.00 0.004±0.00 0.039±0.00 0.113±0.00 34.853±4.99 N/A 23.294±0.67 0.058±0.03 0.139±0.10 0.451±0.09 0.248±0.00 0.746±0.48 1.120±0.62
ENSMUST00000129266 N/A N/A N/A N/A 0.045±0.01 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143155 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A 0.061±0.00 N/A
ENSMUST00000148527 N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENSMUST00000154292 N/A 0.024±0.01 N/A N/A N/A 5.305±0.00 N/A N/A N/A 0.018±0.00 N/A 0.062±0.02 N/A 0.241±0.00
ENSMUST00000176371 N/A N/A 0.009±0.00 0.152±0.00 N/A N/A N/A N/A 0.021±0.00 0.044±0.00 N/A 0.070±0.01 0.494±0.00 0.632±0.19
ENSMUST00000177212 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A 0.028±0.01 N/A N/A 0.145±0.06 0.201±0.13 0.866±0.00
ENSMUSG00000040136 ENSMUST00000033123 0.147±0.10 0.260±0.03 0.090±0.00 1.262±0.99 0.714±0.51 0.638±0.28 7.586±0.93 0.120±0.05 0.023±0.02 0.264±0.13 0.280±0.07 0.105±0.05 0.603±0.57 0.091±0.06

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