C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000007516 NDUFAB1-001 ENSG00000004779 9606 - 16:23581002-23596356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000007516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000007516 21.354±0.00 31.280±0.00 6.754±0.00 40.178±3.64 30.455±20.29 26.774±10.28 112.210±63.09 30.510±7.66 31.375±20.83 17.595±8.90 47.497±5.51 50.796±33.59 83.125±28.71 64.928±32.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D2 CIL_0006D2_0001 CGP 16:23557362-23596356
CIL_0003VC CIL_0003VC_0002 CGP 16:23581002-23641310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000036 NAS ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process
GO:0005504 ISS fatty acid binding
GO:0005509 NAS calcium ion binding
GO:0005743 TAS mitochondrial inner membrane
GO:0005747 ISS mitochondrial respiratory chain complex I
GO:0005759 ISS mitochondrial matrix
GO:0006120 NAS mitochondrial electron transport, NADH to ubiquinone
GO:0006633 IEA:NAS fatty acid biosynthetic process
GO:0008137 NAS NADH dehydrogenase (ubiquinone) activity
GO:0009249 IMP protein lipoylation
GO:0022904 TAS respiratory electron transport chain
GO:0031966 ISS mitochondrial membrane
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033157 Ndufab1-001 protein_coding Mus_musculus 0 597
ENSMUST00000123296 Ndufab1-002 protein_coding Mus_musculus 0 590
ENSMUST00000118750 Gm4459-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000166096 Gm17257-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000106471 Ndufab1-006 protein_coding Mus_musculus 0 449
ENSMUST00000139456 Ndufab1-007 protein_coding Mus_musculus 0 448
ENSMUST00000130904 Ndufab1-005 retained_intron Mus_musculus 0 313
ENSMUST00000153173 Ndufab1-004 retained_intron Mus_musculus 0 267
ENSMUST00000130857 Ndufab1-008 retained_intron Mus_musculus 3.00018e-42 176
ENSMUST00000146964 Ndufab1-010 retained_intron Mus_musculus 9.99995e-41 171
ENSMUST00000118534 Gm16032-001 processed_pseudogene Mus_musculus 1e-35 154

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