C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GABA(A) receptor-associated protein-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000037243 GABARAPL2-001 ENSG00000034713 9606 + 16:75566351-75577881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000037243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000037243 34.533±0.00 29.674±0.00 14.751±0.00 85.040±9.43 29.178±13.94 29.009±15.62 59.590±39.61 35.716±18.81 21.667±4.49 45.058±25.99 29.680±17.24 40.623±27.49 63.262±11.78 51.684±9.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000288 CIL_000288_0001 CGP 16:75536744-75577881
CIL_0001GX CIL_0001GX_0001 CGP 16:75566351-75623300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0000139 ISS Golgi membrane
GO:0000149 ISS SNARE binding
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IDA:IEA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0005794 ISS Golgi apparatus
GO:0005829 ISS cytosol
GO:0006891 ISS intra-Golgi vesicle-mediated transport
GO:0006914 IEA:NAS autophagy
GO:0008017 NAS microtubule binding
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032781 ISS positive regulation of ATPase activity
GO:0048487 ISS beta-tubulin binding
GO:0050811 ISS GABA receptor binding
GO:0051117 ISS ATPase binding
GO:1901799 IMP negative regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034428 Gabarapl2-001 protein_coding Mus_musculus 0 1118
ENSMUST00000133628 Gabarapl2-002 retained_intron Mus_musculus 0 787
ENSMUST00000058213 Oxgr1-201 protein_coding Mus_musculus 0 538
ENSMUST00000191383 RP24-211L16.2-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000154261 Gm6058-001 processed_pseudogene Mus_musculus 0 324

Loading