C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: derlin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000158771 DERL2-001 ENSG00000072849 9606 - 17:5471251-5486217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000158771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000158771 2.617±0.00 4.120±0.00 0.783±0.00 2.153±0.85 3.333±0.00 1.445±0.02 0.696±0.42 3.528±1.76 1.792±0.22 1.492±0.12 0.952±0.01 3.080±1.49 1.813±0.29 5.438±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FL CIL_0000FL_0001 CGP 17:5440912-5486811
CIL_0002PM CIL_0002PM_0001 CGP 17:5471251-5490814

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001967 IEA suckling behavior
GO:0005515 IPI protein binding
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005783 IDA endoplasmic reticulum
GO:0008284 IDA positive regulation of cell proliferation
GO:0016020 IDA membrane
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0030307 IDA positive regulation of cell growth
GO:0030433 IMP ER-associated ubiquitin-dependent protein catabolic process
GO:0030968 IDA endoplasmic reticulum unfolded protein response
GO:0030970 IMP retrograde protein transport, ER to cytosol

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143850 Derl2-001 protein_coding Mus_musculus 0 1450
ENSMUST00000171041 Derl2-007 protein_coding Mus_musculus 0 1206
ENSMUST00000108523 Derl2-002 protein_coding Mus_musculus 0 1024
ENSMUST00000132198 Derl2-006 nonsense_mediated_decay Mus_musculus 0 765
ENSMUST00000018586 Derl2-005 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000140712 Derl2-003 retained_intron Mus_musculus 0 427
ENSMUST00000131340 Derl2-004 nonsense_mediated_decay Mus_musculus 0 344

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