C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chordin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000204604 CHRD-001 ENSG00000090539 9606 + 3:184380073-184389829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000204604
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000204604 1.280±0.00 3.176±0.00 1.899±0.44 2.550±0.00 9.090±0.00 3.946±0.00 1.080±0.00 0.576±0.00 4.998±3.16 2.540±1.08 1.345±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_00056V CIL_00056V_0001 CGP 3:184371935-184390736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001649 IEA osteoblast differentiation
GO:0001702 IEA gastrulation with mouth forming second
GO:0001707 IEA mesoderm formation
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0005515 IPI:IEA protein binding
GO:0005615 NAS extracellular space
GO:0007389 IEA pattern specification process
GO:0007417 IEA central nervous system development
GO:0008201 IEA heparin binding
GO:0009953 IEA dorsal/ventral pattern formation
GO:0019955 NAS cytokine binding
GO:0021919 IMP BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030336 IDA negative regulation of cell migration
GO:0030514 IMP negative regulation of BMP signaling pathway
GO:0030900 IEA forebrain development
GO:0033504 TAS floor plate development
GO:0045545 IEA syndecan binding
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045785 IDA positive regulation of cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007171 Chrd-001 protein_coding Mus_musculus 0 3217
ENSMUST00000115423 Chrd-002 protein_coding Mus_musculus 0 2002
ENSMUST00000153299 Chrd-003 nonsense_mediated_decay Mus_musculus 0 1657
ENSMUST00000151150 Chrd-004 retained_intron Mus_musculus 0 462

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