C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HscB mitochondrial iron-sulfur cluster co-chaperone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216027 HSCB-001 ENSG00000100209 9606 + 22:28742031-28757510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216027
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216027 1.845±0.00 4.307±0.00 1.442±0.94 2.683±1.92 3.818±3.15 3.123±0.00 0.748±0.00 5.456±0.32 3.483±1.15 6.675±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0001 VISTA 22:28282570-28883176
CIL_0006WX CIL_0006WX_0002 CGP 22:28687743-28757515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 TAS mitochondrion
GO:0005813 IDA centrosome
GO:0005886 IDA plasma membrane
GO:0006457 IEA protein folding
GO:0016226 IMP iron-sulfur cluster assembly
GO:0046872 IEA metal ion binding
GO:0051087 IEA chaperone binding
GO:0051259 IEA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056937 Hscb-001 protein_coding Mus_musculus 0 580
ENSMUST00000144850 Hscb-003 nonsense_mediated_decay Mus_musculus 0 383
ENSMUST00000122921 Hscb-002 retained_intron Mus_musculus 0 296
ENSMUST00000145318 Hscb-004 protein_coding Mus_musculus 4.99997e-41 172

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