C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cornichon family AMPA receptor auxiliary protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216416 CNIH1-001 ENSG00000100528 9606 - 14:54423560-54441431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216416
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216416 8.407±0.00 2.190±0.00 1.683±0.00 3.835±0.48 5.853±2.43 2.262±1.31 1.494±0.62 5.747±0.00 7.077±1.86 3.530±0.16 0.747±0.13 4.094±1.31 2.429±0.17 4.190±2.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0001 VISTA 14:53920865-54521777
CIL_00090Z CIL_00090Z_0001 VISTA 14:53923660-54524764
CIL_0000HQ CIL_0000HQ_0001 CGP 14:54396849-54441431
CIL_0000HV CIL_0000HV_0001 CGP 14:54423560-54489196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006955 TAS immune response
GO:0007165 TAS signal transduction
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015903 Cnih1-001 protein_coding Mus_musculus 0 1552
ENSMUST00000146629 Cnih1-002 nonsense_mediated_decay Mus_musculus 0 1221

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