C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cornichon family AMPA receptor auxiliary protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100528 CNIH1 9606 - 14:54423560-54441431 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216416 CNIH1-001 54423560-54441431 protein_coding
  ENST00000395573 CNIH1-002 54426936-54441391 protein_coding
  ENST00000553660 CNIH1-007 54427425-54441357 protein_coding
  ENST00000554683 CNIH1-004 54427595-54441344 nonsense_mediated_decay
  ENST00000556113 CNIH1-005 54430158-54441340 protein_coding
  ENST00000557659 CNIH1-006 54427329-54441376 nonsense_mediated_decay
  ENST00000557690 CNIH1-003 54427523-54441391 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216416ENST00000395573ENST00000553660ENST00000556113ENST00000557659ENST00000557690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216416 8.407±0.00 2.190±0.00 1.683±0.00 3.835±0.48 5.853±2.43 2.262±1.31 1.494±0.62 5.747±0.00 7.077±1.86 3.530±0.16 0.747±0.13 4.094±1.31 2.429±0.17 4.190±2.53
ENST00000395573 N/A 6.441±0.00 N/A 5.168±0.00 11.274±0.00 17.490±0.00 5.547±0.00 15.615±0.00 16.944±0.00 7.812±0.00 3.672±2.90 7.039±1.64 12.977±2.53 14.325±0.00
ENST00000553660 N/A 6.690±0.00 2.022±0.00 N/A 7.165±0.00 10.925±4.07 4.961±3.09 14.316±0.00 17.213±0.00 7.594±0.00 6.980±0.00 20.871±9.44 20.782±5.94 20.229±0.00
ENST00000556113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.817±1.22 N/A N/A N/A
ENST00000557659 N/A N/A N/A N/A 4.553±0.00 N/A 1.337±0.00 5.869±0.00 N/A N/A N/A 12.842±4.07 19.030±0.00 12.263±0.00
ENST00000557690 N/A N/A 2.146±0.00 5.001±0.00 N/A N/A 2.318±0.00 7.218±0.00 N/A 5.241±0.00 N/A 8.082±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0001 VISTA 14:53920865-54521777
CIL_00090Z CIL_00090Z_0001 VISTA 14:53923660-54524764
CIL_0000HQ CIL_0000HQ_0001 CGP 14:54396849-54441431
CIL_0000HV CIL_0000HV_0001 CGP 14:54423560-54489196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006955 TAS immune response
GO:0007165 TAS signal transduction
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020311 cnih1 cornichon family AMPA receptor auxiliary protein 1 protein_coding Danio_rerio
ENSMUSG00000015759 Cnih1 cornichon homolog 1 (Drosophila) protein_coding Mus_musculus

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