C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cornichon homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015903 Cnih1-001 ENSMUSG00000015759 10090 - 14:46775582-46788411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015903 74.518±11.88 164.757±15.33 35.696±0.95 36.510±2.67 66.214±3.29 48.366±5.58 27.334±3.22 43.205±1.53 41.448±13.70 38.962±2.72 23.717±0.79 61.219±24.38 57.174±20.94 6.217±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0000HQ CIL_0000HQ_0002 CGP 14:46760541-46788411
CIL_0000HV CIL_0000HV_0002 CGP 14:46775582-46822242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216416 CNIH1-001 protein_coding Homo_sapiens 0 1552
ENST00000272133 CNIH3-001 protein_coding Homo_sapiens 1e-30 139
ENST00000395573 CNIH1-002 protein_coding Homo_sapiens 0 845
ENST00000553660 CNIH1-007 protein_coding Homo_sapiens 0 909
ENST00000554683 CNIH1-004 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000556113 CNIH1-005 protein_coding Homo_sapiens 0 582
ENST00000557659 CNIH1-006 nonsense_mediated_decay Homo_sapiens 0 789
ENST00000557690 CNIH1-003 protein_coding Homo_sapiens 0 826

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