C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spalt-like transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217086 SALL4-001 ENSG00000101115 9606 - 20:51784042-51802520 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyOvaryPlacentaTestisENST00000217086
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Ovary Placenta Testis
ENST00000217086 0.009±0.00 0.087±0.00 0.073±0.05 0.047±0.00 0.011±0.01 0.175±0.10 0.395±0.33 0.031±0.00 1.071±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007I5 CIL_0007I5_0001 CGP 20:51596514-51802520
CIL_0001H1 CIL_0001H1_0001 CGP 20:51784042-52204308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IEA heterochromatin
GO:0001701 IEA in utero embryonic development
GO:0001833 IEA inner cell mass cell proliferation
GO:0001843 IEA neural tube closure
GO:0003281 IEA ventricular septum development
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IEA heart development
GO:0009888 IEA tissue development
GO:0019827 IEA stem cell maintenance
GO:0021915 IEA neural tube development
GO:0030326 IEA embryonic limb morphogenesis
GO:0043234 IEA protein complex
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029061 Sall4-001 protein_coding Mus_musculus 0 2109
ENSMUST00000103074 Sall4-002 protein_coding Mus_musculus 0 826
ENSMUST00000137536 Sall4-004 protein_coding Mus_musculus 0 449
ENSMUST00000150588 Sall4-006 protein_coding Mus_musculus 0 259
ENSMUST00000130640 Sall4-003 processed_transcript Mus_musculus 1.4013e-45 189

Loading