C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fermitin family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217289 FERMT1-001 ENSG00000101311 9606 - 20:6074845-6123544 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartOvaryPlacentaENST00000217289
Transcript ID Adipose Bladder Brain Breast Colon Heart Ovary Placenta
ENST00000217289 0.093±0.00 0.080±0.00 0.037±0.00 1.839±0.00 1.466±0.00 0.046±0.00 4.718±3.57 0.799±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IC CIL_0001IC_0001 CGP 20:6040778-6123544
CIL_0001J1 CIL_0001J1_0001 CGP 20:6074845-6780280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007155 IDA cell adhesion
GO:0030054 IDA cell junction
GO:0031941 IEA filamentous actin
GO:0042995 IEA cell projection
GO:0043616 IDA keratinocyte proliferation
GO:0051546 IDA keratinocyte migration
GO:0090162 IDA establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038280 Fermt1-001 protein_coding Mus_musculus 0 2143
ENSMUST00000134937 Fermt1-002 retained_intron Mus_musculus 0 1203

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