C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000218348 USP11-201 ENSG00000102226 9606 + X:47232866-47248327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218348 13.311±0.00 23.480±0.00 1.950±0.00 76.286±58.51 3.937±2.45 4.478±2.68 4.641±2.81 25.237±0.00 3.853±2.30 9.908±8.46 5.749±4.26 28.187±21.64 17.099±5.95 61.507±17.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GD CIL_0005GD_0001 CGP X:47217860-47248328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004843 IEA:IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033383 Usp11-001 protein_coding Mus_musculus 0 1784
ENSMUST00000149960 Usp11-003 retained_intron Mus_musculus 0 1574
ENSMUST00000137101 Usp11-002 retained_intron Mus_musculus 0 1375
ENSDART00000088808 usp32-001 protein_coding Danio_rerio 0.00006 55

Loading