C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102225-ENSG00000102226 CGP 9606 X:47217860-47248328
GeneTranscriptPositionBiotype
ENSG00000102226 (USP11)
ubiquitin specific peptidase 11 		ENST00000218348 (USP11-201) 47232866-47248327 protein_coding
ENST00000377078 (USP11-005) 47233772-47241632 protein_coding
ENST00000377080 (USP11-004) 47233392-47240868 protein_coding
ENST00000377107 (USP11-002) 47232690-47248328 protein_coding
ENST00000467378 (USP11-001) 47247082-47247952 retained_intron
ENST00000469080 (USP11-008) 47233030-47248308 retained_intron
ENST00000478596 (USP11-003) 47232984-47240371 retained_intron
ENST00000480104 (USP11-010) 47242156-47244525 retained_intron
ENST00000488848 (USP11-007) 47243396-47245325 retained_intron
ENST00000489030 (USP11-006) 47241454-47242175 retained_intron
ENST00000489111 (USP11-009) 47240402-47241178 retained_intron
ENST00000497179 (USP11-011) 47244513-47247697 retained_intron
CIL_0005GD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031065-ENSMUSG00000031066 CGP 10090 X:20687954-20720539
GeneTranscriptPositionBiotype
ENSMUSG00000031065 (Cdk16)
cyclin-dependent kinase 16 		ENSMUST00000033380 (Cdk16-001) 20688418-20699880 protein_coding
ENSMUST00000115364 (Cdk16-002) 20687954-20699880 protein_coding
ENSMUST00000122944 (Cdk16-005) 20695861-20696485 retained_intron
ENSMUST00000125035 (Cdk16-006) 20696018-20697208 retained_intron
ENSMUST00000129914 (Cdk16-008) 20696445-20699799 processed_transcript
ENSMUST00000132365 (Cdk16-003) 20687999-20694362 processed_transcript
ENSMUST00000146259 (Cdk16-004) 20694283-20696285 retained_intron
ENSMUST00000148757 (Cdk16-007) 20696405-20697167 retained_intron
ENSMUSG00000031066 (Usp11)
ubiquitin specific peptidase 11 		ENSMUST00000033383 (Usp11-001) 20703906-20720539 protein_coding
ENSMUST00000127294 (Usp11-004) 20703934-20713153 processed_transcript
ENSMUST00000137101 (Usp11-002) 20703960-20717685 retained_intron
ENSMUST00000149960 (Usp11-003) 20711825-20720537 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GD_0001ENSG00000102226ENST00000218348ENST00000377078ENST00000377080ENST00000377107ENST00000467378ENST00000469080ENST00000478596ENST00000480104ENST00000488848ENST00000489030ENST00000489111ENST00000497179CIL_0005GD_0002ENSMUSG00000031065ENSMUST00000033380ENSMUST00000115364ENSMUST00000122944ENSMUST00000125035ENSMUST00000129914ENSMUST00000132365ENSMUST00000146259ENSMUST00000148757ENSMUSG00000031066ENSMUST00000033383ENSMUST00000127294ENSMUST00000137101ENSMUST00000149960
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GD_0001ENSG00000102226ENST00000218348ENST00000377078ENST00000377080ENST00000478596ENST00000480104ENST00000497179CIL_0005GD_0002ENSMUSG00000031065ENSMUST00000033380ENSMUST00000115364ENSMUST00000146259ENSMUSG00000031066ENSMUST00000033383ENSMUST00000127294ENSMUST00000149960
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102226 ENST00000218348 13.311±0.00 23.480±0.00 1.950±0.00 76.286±58.51 3.937±2.45 4.478±2.68 4.641±2.81 25.237±0.00 3.853±2.30 9.908±8.46 5.749±4.26 28.187±21.64 17.099±5.95 61.507±17.52
ENST00000377078 N/A N/A 1.990±0.00 N/A N/A N/A N/A N/A 3.396±0.00 N/A N/A N/A N/A N/A
ENST00000377080 N/A N/A N/A N/A N/A 1.925±0.00 2.227±0.00 4.033±0.00 N/A 6.015±0.00 N/A 7.909±0.00 N/A N/A
ENST00000377107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478596 N/A N/A N/A N/A N/A N/A N/A 1.725±0.00 N/A 2.860±0.00 N/A N/A N/A N/A
ENST00000480104 N/A N/A 2.712±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497179 N/A 23.717±0.00 N/A N/A 8.133±0.00 N/A N/A N/A N/A N/A N/A 9.529±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031065 ENSMUST00000033380 80.953±2.30 97.233±12.97 52.034±7.25 48.724±17.51 76.420±4.81 68.333±9.82 61.950±1.40 55.100±5.47 18.815±8.54 54.300±3.13 43.626±1.41 89.139±31.11 29.550±16.53 24.711±15.29
ENSMUST00000115364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.360±0.00 N/A
ENSMUST00000122944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146259 N/A N/A N/A 33.816±0.00 N/A N/A N/A N/A N/A N/A N/A 30.627±3.12 23.565±3.72 9.595±0.00
ENSMUST00000148757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031066 ENSMUST00000033383 5.691±4.37 9.342±1.76 4.279±0.45 38.308±8.42 4.084±0.90 1.666±0.55 2.335±0.41 2.930±0.59 2.731±2.32 5.619±0.35 0.454±0.15 18.640±5.38 5.270±1.92 1.751±0.38
ENSMUST00000127294 N/A N/A N/A N/A N/A N/A N/A N/A 0.228±0.00 N/A N/A N/A N/A N/A
ENSMUST00000137101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149960 N/A 2.210±0.56 1.348±0.04 5.124±0.37 1.085±0.00 0.348±0.00 0.248±0.00 0.568±0.00 0.506±0.42 1.070±0.00 0.201±0.06 4.571±0.00 1.114±0.00 0.275±0.00

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