C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: par-6 family cell polarity regulator alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219255 PARD6A-001 ENSG00000102981 9606 + 16:67660959-67662774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverMuscleOvaryPlacentaENST00000219255
Transcript ID Adipose Brain Colon Liver Muscle Ovary Placenta
ENST00000219255 1.331±0.00 0.350±0.00 0.615±0.00 0.529±0.00 1.564±0.00 3.540±0.66 1.681±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079G CIL_00079G_0001 CGP 16:67657512-67662778
CIL_00078Z CIL_00078Z_0001 CGP 16:67660946-67667265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005923 ISS tight junction
GO:0005938 IEA cell cortex
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008134 TAS transcription factor binding
GO:0016032 TAS viral process
GO:0017048 ISS Rho GTPase binding
GO:0030742 ISS GTP-dependent protein binding
GO:0034329 TAS cell junction assembly
GO:0042995 IEA cell projection
GO:0043234 IEA protein complex
GO:0045177 IEA apical part of cell
GO:0045216 TAS cell-cell junction organization
GO:0045217 ISS cell-cell junction maintenance
GO:0051301 IEA cell division
GO:0070830 TAS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093195 Pard6a-201 protein_coding Mus_musculus 0 1520
ENSMUST00000098444 Pard6a-202 protein_coding Mus_musculus 0 1325

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