C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofilament, medium polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221166 NEFM-001 ENSG00000104722 9606 + 8:24913012-24919093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryPlacentaENST00000221166
Transcript ID Adrenal Brain Breast Colon Ovary Placenta
ENST00000221166 0.021±0.00 2.434±0.00 0.061±0.00 0.047±0.00 0.697±0.27 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YP CIL_0001YP_0002 CGP 8:24913012-24957110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 IEA intermediate filament
GO:0005883 IEA neurofilament
GO:0008017 TAS microtubule binding
GO:0008088 IEA axon cargo transport
GO:0030424 TAS axon
GO:0031133 IEA regulation of axon diameter
GO:0031594 IEA neuromuscular junction
GO:0033693 TAS neurofilament bundle assembly
GO:0043005 IEA neuron projection
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0045110 IEA intermediate filament bundle assembly
GO:0060052 IEA neurofilament cytoskeleton organization
GO:0097418 IDA neurofibrillary tangle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022638 Nefm-001 protein_coding Mus_musculus 0 2278
ENSMUST00000111089 Nefm-002 protein_coding Mus_musculus 0 1801

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