C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001YP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043697-ENSDARG00000012426 CGP 7955 8:7433111-7447039
GeneTranscriptPositionBiotype
ENSDARG00000012426 (neflb)
neurofilament, light polypeptide b 		ENSDART00000005321 (neflb-001) 7444401-7447039 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001YP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104722-ENSG00000272157 CGP 9606 8:24913012-24957110
GeneTranscriptPositionBiotype
ENSG00000104722 (NEFM)
neurofilament, medium polypeptide 		ENST00000221166 (NEFM-001) 24913012-24919093 protein_coding
ENST00000433454 (NEFM-002) 24914942-24919098 protein_coding
ENST00000437366 (NEFM-201) 24913764-24919090 protein_coding
ENST00000518131 (NEFM-003) 24913761-24918976 protein_coding
ENST00000521540 (NEFM-004) 24913764-24918615 processed_transcript
ENST00000523467 (NEFM-006) 24913758-24915692 processed_transcript
ENSG00000272157 (CTD-2168K21.2)
 ENST00000607735 (CTD-2168K21.2-001) 24956621-24957110 antisense
ENSG00000272163 (GS1-72M22.1)
 ENST00000607058 (GS1-72M22.1-001) 24912165-24914717 antisense
ENSG00000277586 (NEFL)
neurofilament, light polypeptide 		ENST00000610854 (NEFL-001) 24950955-24957110 protein_coding
ENST00000615973 (NEFL-007) 24955225-24956721 retained_intron
ENST00000619417 (NEFL-201) 24952380-24956612 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0001YP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022054-ENSMUSG00000022054 CGP 10090 14:68082590-68124846
GeneTranscriptPositionBiotype
ENSMUSG00000022054 (Nefm)
neurofilament, medium polypeptide 		ENSMUST00000022638 (Nefm-001) 68119283-68124846 protein_coding
ENSMUST00000111089 (Nefm-002) 68082590-68124846 protein_coding
ENSMUSG00000022055 (Nefl)
neurofilament, light polypeptide 		ENSMUST00000022639 (Nefl-001) 68083863-68089095 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YP_0001ENSDARG00000012426ENSDART00000005321CIL_0001YP_0002ENSG00000104722ENST00000221166ENST00000433454ENST00000437366ENST00000518131ENST00000521540ENST00000523467ENSG00000272157ENST00000607735ENSG00000272163ENST00000607058ENSG00000277586ENST00000610854ENST00000615973ENST00000619417CIL_0001YP_0003ENSMUSG00000022054ENSMUST00000022638ENSMUST00000111089ENSMUSG00000022055ENSMUST00000022639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YP_0001ENSDARG00000012426ENSDART00000005321CIL_0001YP_0002ENSG00000104722ENST00000221166ENST00000433454ENST00000437366ENST00000518131ENST00000521540ENST00000523467ENSG00000272157ENST00000607735ENSG00000272163ENST00000607058ENSG00000277586ENST00000610854ENST00000615973ENST00000619417CIL_0001YP_0003ENSMUSG00000022054ENSMUST00000022638ENSMUST00000111089ENSMUSG00000022055ENSMUST00000022639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012426 ENSDART00000005321 N/A N/A N/A 24.722±9.05 N/A N/A 0.404±0.07 0.900±0.17 N/A N/A 0.657±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104722 ENST00000221166 N/A 0.021±0.00 N/A 2.434±0.00 0.061±0.00 0.047±0.00 N/A N/A N/A N/A N/A 0.697±0.27 0.041±0.00 N/A
ENST00000433454 N/A N/A N/A 60.245±0.00 N/A 0.809±0.00 N/A N/A N/A N/A N/A 0.414±0.00 N/A 2.404±0.00
ENST00000437366 N/A N/A N/A 273.248±0.00 N/A 2.783±0.00 N/A 0.762±0.00 N/A 0.104±0.00 N/A 0.867±0.87 0.011±0.00 6.325±1.12
ENST00000518131 N/A N/A N/A N/A 0.101±0.03 N/A 0.073±0.00 0.385±0.00 0.036±0.01 0.062±0.00 0.045±0.00 0.022±0.00 N/A N/A
ENST00000521540 N/A N/A N/A 5.274±0.00 N/A N/A N/A N/A 0.082±0.00 N/A 0.229±0.00 N/A 0.021±0.00 15.215±0.00
ENST00000523467 N/A N/A N/A 14.049±0.00 0.983±0.00 N/A N/A N/A N/A 0.678±0.00 0.941±0.00 N/A 0.117±0.04 N/A
ENSG00000272157 ENST00000607735 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 N/A N/A 0.298±0.00 N/A
ENSG00000272163 ENST00000607058 N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.206±0.00 N/A 0.049±0.00 N/A N/A 0.023±0.00 N/A
ENSG00000277586 ENST00000610854 N/A 0.070±0.00 0.610±0.00 91.326±36.33 0.055±0.02 1.245±1.17 0.005±0.00 0.847±0.00 0.261±0.00 0.047±0.00 0.019±0.00 0.116±0.07 0.018±0.00 0.451±0.12
ENST00000615973 N/A N/A N/A N/A 0.221±0.11 0.438±0.00 N/A 0.052±0.00 N/A 0.226±0.00 0.026±0.00 0.566±0.39 0.070±0.00 1.178±0.00
ENST00000619417 0.010±0.00 0.070±0.00 0.803±0.00 127.633±104.11 0.205±0.00 2.475±2.02 0.031±0.01 2.568±0.00 N/A N/A 0.025±0.00 0.609±0.05 0.038±0.00 1.461±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022054 ENSMUST00000022638 0.011±0.00 0.422±0.03 0.227±0.04 55.034±45.39 0.039±0.01 0.829±0.04 0.075±0.03 0.153±0.08 0.035±0.04 0.039±0.00 0.017±0.00 0.032±0.01 0.125±0.06 0.066±0.06
ENSMUST00000111089 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A 0.029±0.00
ENSMUSG00000022055 ENSMUST00000022639 0.022±0.01 2.070±1.42 0.311±0.02 79.788±47.33 0.031±0.01 2.977±0.24 0.230±0.04 0.640±0.31 0.059±0.08 0.023±0.01 0.010±0.00 0.041±0.02 0.171±0.15 0.069±0.01

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