C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofilament, medium polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022638 Nefm-001 ENSMUSG00000022054 10090 - 14:68119283-68124846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022638
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022638 0.011±0.00 0.422±0.03 0.227±0.04 55.034±45.39 0.039±0.01 0.829±0.04 0.075±0.03 0.153±0.08 0.035±0.04 0.039±0.00 0.017±0.00 0.032±0.01 0.125±0.06 0.066±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PH CIL_0000PH_0002 CGP 14:67751928-68124846
CIL_0001YP CIL_0001YP_0003 CGP 14:68082590-68124846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IGI microtubule cytoskeleton organization
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005883 IDA neurofilament
GO:0008088 IMP axon cargo transport
GO:0030424 IDA axon
GO:0031133 IMP regulation of axon diameter
GO:0031594 IDA neuromuscular junction
GO:0043005 IDA neuron projection
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0045110 IGI intermediate filament bundle assembly
GO:0060052 IGI neurofilament cytoskeleton organization
GO:0097418 IEA neurofibrillary tangle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080256 nefma-001 protein_coding Danio_rerio 0 448
ENSDART00000101424 nefma-201 protein_coding Danio_rerio 0 436
ENST00000221166 NEFM-001 protein_coding Homo_sapiens 0 2278
ENST00000257860 PRPH-001 protein_coding Homo_sapiens 0.000000000000006 88
ENST00000433454 NEFM-002 protein_coding Homo_sapiens 0 1242
ENST00000437366 NEFM-201 protein_coding Homo_sapiens 0 2272
ENST00000518131 NEFM-003 protein_coding Homo_sapiens 0 2242
ENST00000521540 NEFM-004 processed_transcript Homo_sapiens 0 2095
ENST00000523467 NEFM-006 processed_transcript Homo_sapiens 0 828
ENST00000530631 PRPH-003 retained_intron Homo_sapiens 0.000000000000002 88
ENST00000532332 PRPH-004 protein_coding Homo_sapiens 0.000000000000001 88

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