C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222399 LAMB1-001 ENSG00000091136 9606 - 7:107923818-108003255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222399
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222399 48.991±0.00 10.883±0.00 9.543±1.41 21.707±15.29 20.407±0.00 34.241±0.00 6.405±2.68 17.852±13.09 2.999±0.00 15.869±7.27 48.386±12.35 25.754±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447
CIL_00063H CIL_00063H_0002 CGP 7:107923799-108130356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005198 NAS structural molecule activity
GO:0005201 IDA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IEA basal lamina
GO:0005606 IPI laminin-1 complex
GO:0005607 TAS laminin-2 complex
GO:0005615 IDA extracellular space
GO:0007155 TAS cell adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007411 TAS axon guidance
GO:0007566 IEA embryo implantation
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA cell migration
GO:0019899 IEA enzyme binding
GO:0021812 IMP neuronal-glial interaction involved in cerebral cortex radial glia guided migration
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030335 IDA positive regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0031175 IDA neuron projection development
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0035987 IEP endodermal cell differentiation
GO:0042476 IDA odontogenesis
GO:0043208 IEA glycosphingolipid binding
GO:0043256 IEA laminin complex
GO:0043257 TAS laminin-8 complex
GO:0043259 IDA laminin-10 complex
GO:0048471 ISS perinuclear region of cytoplasm
GO:0050679 TAS positive regulation of epithelial cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169088 Lamb1-004 protein_coding Mus_musculus 0 6093
ENSMUST00000002979 Lamb1-001 protein_coding Mus_musculus 0 6002
ENSMUST00000164919 Lamb1-005 nonsense_mediated_decay Mus_musculus 0 1799
ENSMUST00000169065 Lamb1-002 retained_intron Mus_musculus 0 1044
ENSMUST00000172134 Lamb1-007 retained_intron Mus_musculus 0 333
ENSMUST00000164009 Lamb1-008 retained_intron Mus_musculus 0 305

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