C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002979 Lamb1-001 ENSMUSG00000002900 10090 + 12:31265293-31329644 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002979 20.843±6.60 11.247±4.80 23.241±2.22 5.297±3.06 14.308±4.35 5.296±0.65 8.371±2.57 14.166±2.49 1.502±0.80 13.191±6.54 2.136±0.83 22.314±20.51 63.771±33.94 1.123±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0002 VISTA 12:31009963-31611477

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IMP integrin binding
GO:0005201 ISS extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA:ISS basement membrane
GO:0005605 IDA basal lamina
GO:0005606 IDA:ISS laminin-1 complex
GO:0005607 ISS laminin-2 complex
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0007162 IDA negative regulation of cell adhesion
GO:0007566 IMP embryo implantation
GO:0007611 NAS learning or memory
GO:0016477 IMP cell migration
GO:0019899 IPI enzyme binding
GO:0021812 IEA neuronal-glial interaction involved in cerebral cortex radial glia guided migration
GO:0030335 ISS positive regulation of cell migration
GO:0031012 IEA extracellular matrix
GO:0031175 IDA:ISS neuron projection development
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0035987 IEA endodermal cell differentiation
GO:0042476 ISS odontogenesis
GO:0043208 IDA glycosphingolipid binding
GO:0043256 IDA laminin complex
GO:0043257 ISS laminin-8 complex
GO:0043259 IPI:ISS laminin-10 complex
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222399 LAMB1-001 protein_coding Homo_sapiens 0 6002
ENST00000305544 LAMB2-003 protein_coding Homo_sapiens 1e-23 117
ENST00000393560 LAMB1-002 protein_coding Homo_sapiens 0 2748
ENST00000393561 LAMB1-003 protein_coding Homo_sapiens 0 5969
ENST00000418109 LAMB2-001 protein_coding Homo_sapiens 1e-23 117
ENST00000468518 LAMB1-013 processed_transcript Homo_sapiens 0 388
ENST00000468999 LAMB1-009 processed_transcript Homo_sapiens 0 610
ENST00000470995 LAMB1-010 processed_transcript Homo_sapiens 0 265
ENST00000472714 LAMB1-004 retained_intron Homo_sapiens 0 756
ENST00000474380 LAMB1-012 processed_transcript Homo_sapiens 0 597
ENST00000480640 LAMB2-011 retained_intron Homo_sapiens 1e-24 117
ENST00000491196 LAMB1-011 processed_transcript Homo_sapiens 0 335

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