C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169088 Lamb1-004 ENSMUSG00000002900 10090 + 12:31265234-31329493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000169088
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000169088 6.994±0.00 10.561±1.76 9.819±0.00 9.187±3.90 4.837±0.37 1.413±0.00 3.364±0.76 0.361±0.06 5.220±0.36 27.169±30.71 150.888±47.51 1.363±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0002 VISTA 12:31009963-31611477

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IMP integrin binding
GO:0005201 ISS extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 ISS basement membrane
GO:0005605 IDA basal lamina
GO:0005606 ISS laminin-1 complex
GO:0005607 ISS laminin-2 complex
GO:0007155 IEA cell adhesion
GO:0007162 IDA negative regulation of cell adhesion
GO:0007566 IMP embryo implantation
GO:0007611 NAS learning or memory
GO:0016477 IMP cell migration
GO:0019899 IPI enzyme binding
GO:0030335 ISS positive regulation of cell migration
GO:0031175 ISS neuron projection development
GO:0042476 ISS odontogenesis
GO:0043208 IDA glycosphingolipid binding
GO:0043256 IDA laminin complex
GO:0043257 ISS laminin-8 complex
GO:0043259 ISS laminin-10 complex
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222399 LAMB1-001 protein_coding Homo_sapiens 0 6093
ENST00000305544 LAMB2-003 protein_coding Homo_sapiens 1e-23 117
ENST00000393560 LAMB1-002 protein_coding Homo_sapiens 0 2819
ENST00000393561 LAMB1-003 protein_coding Homo_sapiens 0 5938
ENST00000418109 LAMB2-001 protein_coding Homo_sapiens 1e-23 117
ENST00000468518 LAMB1-013 processed_transcript Homo_sapiens 0 388
ENST00000468999 LAMB1-009 processed_transcript Homo_sapiens 0 610
ENST00000470995 LAMB1-010 processed_transcript Homo_sapiens 0 265
ENST00000472714 LAMB1-004 retained_intron Homo_sapiens 0 721
ENST00000474380 LAMB1-012 processed_transcript Homo_sapiens 0 597
ENST00000480640 LAMB2-011 retained_intron Homo_sapiens 1e-24 117
ENST00000491196 LAMB1-011 processed_transcript Homo_sapiens 0 335

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